Transcript : dd_Smed_v6_590_0_1 S. mediterranea

Length  2503     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067856.1, clone H.16.2b unknown mRNA sequence
AY967502.1, clone HE.2.11H mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002259.1 Homo sapiens karyopherin subunit alpha 4 0.0 73-1506 1434 1
NP_032492.1 Mus musculus karyopherin (importin) alpha 3 0.0 73-1599 1527 1
NP_958462.1 Danio rerio karyopherin alpha 4 (importin alpha 3) 0.0 73-1515 1443 1

22 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01749 PFAM IPR002652 Importin beta binding domain 1.0E-16 70-237 168 1
PS50176 PROFILE IPR000225 Armadillo/plakoglobin ARM repeat profile. 10.657 373-501 129 1
PS51214 PROFILE IPR002652 IBB domain profile. 15.223 34-213 180 1
PF00514 PFAM IPR000225 Armadillo/beta-catenin-like repeat 1.2E-8 853-966 114 1
PF00514 PFAM IPR000225 Armadillo/beta-catenin-like repeat 2.5E-12 472-582 111 1
PF00514 PFAM IPR000225 Armadillo/beta-catenin-like repeat 9.9E-6 1234-1347 114 1
PF00514 PFAM IPR000225 Armadillo/beta-catenin-like repeat 2.6E-7 976-1095 120 1
PF00514 PFAM IPR000225 Armadillo/beta-catenin-like repeat 1.8E-11 343-462 120 1
PF00514 PFAM IPR000225 Armadillo/beta-catenin-like repeat 2.8E-8 1102-1218 117 1
SM00185 SMART IPR000225 Armadillo/beta-catenin-like repeats 21.0 724-843 120 1
SM00185 SMART IPR000225 Armadillo/beta-catenin-like repeats 1.2E-6 976-1095 120 1
SM00185 SMART IPR000225 Armadillo/beta-catenin-like repeats 6.9E-4 1231-1350 120 1
SM00185 SMART IPR000225 Armadillo/beta-catenin-like repeats 1.2E-7 850-969 120 1
SM00185 SMART IPR000225 Armadillo/beta-catenin-like repeats 9.2E-11 340-462 123 1
SM00185 SMART IPR000225 Armadillo/beta-catenin-like repeats 1.0E-9 469-588 120 1
SM00185 SMART IPR000225 Armadillo/beta-catenin-like repeats 2.1E-4 1102-1221 120 1
SM00185 SMART IPR000225 Armadillo/beta-catenin-like repeats 24.0 595-717 123 1
SSF48371 SSF IPR016024 ARM repeat 4.99E-122 73-1494 1422 1
PS50176 PROFILE IPR000225 Armadillo/plakoglobin ARM repeat profile. 8.697 502-582 81 1
PTHR23316:SF5 PANTHER IMPORTIN SUBUNIT ALPHA 0.0 49-1596 1548 1
G3DSA:1.25.10.10 GENE3D IPR011989 Leucine-rich Repeat Variant 1.3E-131 61-1491 1431 1
PTHR23316 PANTHER IMPORTIN ALPHA 0.0 49-1596 1548 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
64-1599 1536 1
2144-2281 138 1
2063-2200 138 -1
1658-1777 120 -1
1740-1853 114 1
140-250 111 1
98-199 102 -1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF320401 4.1E-102 1 341.9 0.5709149 87-1515 1429 1
TF354205 1.7E-210 1 700.7 0.5685178 90-1512 1423 1
TF101178 1.5E-303 1 1009.1 0.592489 117-1599 1483 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)