Contig : dd_Smed_v6_579_0_1 S. mediterranea

Id  dd_Smed_v6_579_0_1 Length  6598    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_724004.1 Drosophila melanogaster Myosin heavy chain 0.0 651-6380 5730 1
XP_001651219.1 Aedes aegypti myosin heavy chain, nonmuscle or smooth muscle 0.0 585-6380 5796 1
XP_002423957.1 Pediculus humanus corporis myosin-9, putative 0.0 564-6380 5817 1

21 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00015 SMART IPR000048 Short calmodulin-binding motif containing conserved Ile and Gln residues. 9.8E-4 2892-2957 66 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 4.96E-295 726-3062 2337 1
SSF90257 SSF Myosin rod fragments 3.4E-7 3750-4010 261 1
SSF90257 SSF Myosin rod fragments 5.1E-18 3417-3764 348 1
PF01576 PFAM IPR002928 Myosin tail 0.0 3756-6329 2574 1
G3DSA:4.10.270.10 GENE3D IPR027401 Myosin, subunit A 3.4E-30 2883-3062 180 1
PS50096 PROFILE IPR000048 IQ motif profile. 8.974 2895-2981 87 1
SSF90257 SSF Myosin rod fragments 1.26E-18 4254-4604 351 1
PR00193 PRINTS IPR001609 Myosin heavy chain signature 2.06E-70 1935-2018 84 1
PR00193 PRINTS IPR001609 Myosin heavy chain signature 2.06E-70 2097-2180 84 1
PR00193 PRINTS IPR001609 Myosin heavy chain signature 2.06E-70 903-959 57 1
PR00193 PRINTS IPR001609 Myosin heavy chain signature 2.06E-70 1071-1145 75 1
PR00193 PRINTS IPR001609 Myosin heavy chain signature 2.06E-70 1242-1322 81 1
SM00242 SMART IPR001609 Myosin. Large ATPases. 0.0 795-2888 2094 1
PTHR13140 PANTHER MYOSIN 0.0 570-6359 5790 1
G3DSA:1.20.5.340 GENE3D   6.0E-24 3066-3338 273 1
PTHR13140:SF364 PANTHER MYOSIN HEAVY CHAIN, ISOFORM O-RELATED 0.0 570-6359 5790 1
PF02736 PFAM IPR004009 Myosin N-terminal SH3-like domain 3.5E-15 660-782 123 1
PF00063 PFAM IPR001609 Myosin head (motor domain) 9.0E-271 822-2849 2028 1
SSF90257 SSF Myosin rod fragments 2.09E-23 3066-3440 375 1
SSF90257 SSF Myosin rod fragments 1.26E-10 4839-5204 366 1

24 ORFs

Contig Location Length Strand Sequence
576-6449 5874 1
5320-5628 309 -1
6181-6393 213 -1
1851-2042 192 -1
1981-2169 189 1
2318-2497 180 -1
5552-5725 174 -1
775-942 168 -1
2227-2385 159 1
640-795 156 1
4807-4962 156 -1
3497-3646 150 -1
1312-1458 147 -1
2172-2312 141 -1
4487-4624 138 -1
5809-5943 135 1
1514-1645 132 -1
1168-1293 126 -1
332-454 123 -1
2215-2334 120 -1
1199-1312 114 -1
5070-5180 111 -1
3855-3965 111 -1
34-138 105 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF333601 0.0 3 2023.0 0.8785996 654-6450 5797 1
TF336753 0.0 3 1226.6 0.40391028 3747-6411 2665 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)