Contig : dd_Smed_v6_5784_0_1 S. mediterranea

Id  dd_Smed_v6_5784_0_1 Length  1035    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_940986.1 Homo sapiens carbonic anhydrase XIII 1.0E-57 45-827 783 1
NP_078771.1 Mus musculus carbonic anhydrase 13 2.0E-57 45-827 783 1
NP_001117693.1 Oncorhynchus mykiss carbonic anhydrase 2 4.0E-64 45-830 786 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51144 PROFILE IPR001148 Alpha-carbonic anhydrases profile. 63.662 39-824 786 1
SM01057 SMART IPR001148 Eukaryotic-type carbonic anhydrase 1.9E-94 45-824 780 1
SSF51069 SSF IPR001148 Carbonic anhydrase 1.83E-74 42-824 783 1
PF00194 PFAM IPR001148 Eukaryotic-type carbonic anhydrase 5.2E-75 45-824 780 1
PTHR18952 PANTHER IPR023561 CARBONIC ANHYDRASE 6.3E-99 45-827 783 1
G3DSA:3.10.200.10 GENE3D IPR001148 Carbonic Anhydrase II 1.5E-76 39-824 786 1

6 ORFs

Contig Location Length Strand Sequence
3-830 828 1
802-1035 234 1
717-884 168 -1
267-413 147 -1
670-798 129 1
2-109 108 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351978 1.0E-28 3 99.3 0.65603864 66-744 679 1
TF352926 7.1E-31 3 107.4 0.6995169 99-822 724 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)