Transcript : dd_Smed_v6_5784_0_1 S. mediterranea

Length  1035     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_940986.1 Homo sapiens carbonic anhydrase 13 1.0E-57 45-827 783 1
NP_078771.1 Mus musculus carbonic anhydrase 13 2.0E-57 45-827 783 1
NP_001117693.1 Oncorhynchus mykiss carbonic anhydrase 2 4.0E-64 45-830 786 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51144 PROFILE IPR001148 Alpha-carbonic anhydrases profile. 63.662 39-824 786 1
SM01057 SMART IPR001148 Eukaryotic-type carbonic anhydrase 1.9E-94 45-824 780 1
SSF51069 SSF IPR001148 Carbonic anhydrase 1.83E-74 42-824 783 1
PF00194 PFAM IPR001148 Eukaryotic-type carbonic anhydrase 5.2E-75 45-824 780 1
PTHR18952 PANTHER IPR023561 CARBONIC ANHYDRASE 6.3E-99 45-827 783 1
G3DSA:3.10.200.10 GENE3D IPR001148 Carbonic Anhydrase II 1.5E-76 39-824 786 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
3-830 828 1
802-1035 234 1
717-884 168 -1
267-413 147 -1
670-798 129 1
2-109 108 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351978 1.0E-28 3 99.3 0.65603864 66-744 679 1
TF352926 7.1E-31 3 107.4 0.6995169 99-822 724 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)