Transcript : dd_Smed_v6_56_0_2 S. mediterranea

Length  2389     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_034610.1 Mus musculus heat shock protein 90, alpha (cytosolic), class A member 1 0.0 996-2321 1326 1
NP_005339.3 Homo sapiens heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0 996-2321 1326 1
NP_786937.1 Rattus norvegicus heat shock protein 90, alpha (cytosolic), class A member 1 0.0 996-2321 1326 1

17 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 1.39E-82 741-794 54 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 1.39E-82 459-509 51 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 1.39E-82 534-599 66 1
SSF55874 SSF IPR003594 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6.02E-72 195-815 621 1
G3DSA:3.30.565.10 GENE3D IPR003594   2.8E-95 984-1028 45 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 1.39E-82 195-254 60 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 1.39E-82 258-323 66 1
PS00298 PROSITE IPR019805 Heat shock hsp90 proteins family signature. 0.0 255-281 27 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 1.39E-82 687-737 51 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 1.39E-82 405-455 51 1
SSF110942 SSF HSP90 C-terminal domain 2.48E-38 1836-2201 366 1
SSF54211 SSF IPR020568 Ribosomal protein S5 domain 2-like 8.34E-108 1002-1766 765 1
G3DSA:3.30.565.10 GENE3D IPR003594   2.8E-95 195-800 606 1
PF13589 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1.4E-11 258-620 363 1
SM00387 SMART IPR003594 Histidine kinase-like ATPases 1.2E-6 261-722 462 1
PF00183 PFAM IPR001404 Hsp90 protein 2.6E-261 729-2318 1590 1
PTHR11528 PANTHER IPR001404 HEAT SHOCK PROTEIN 90 0.0 174-2318 2145 1

Genomics

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9 ORFs

Contig Location Length Strand Sequence
177-2321 2145 1
326-526 201 -1
2195-2389 195 -1
856-996 141 1
639-773 135 -1
590-712 123 -1
739-852 114 1
1536-1640 105 -1
2287-2388 102 -1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105969 0.0 3 1067.0 0.87693596 186-2280 2095 1
TF300686 0.0 3 1331.4 0.8882378 195-2316 2122 1
TF352702 4.2E-228 3 759.1 0.4323985 1239-2271 1033 1
TF344108 1.7E-4 5 17.7 0.6262034 814-2311 1498 -1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)