Contig : dd_Smed_v6_56_0_1 S. mediterranea

Id  dd_Smed_v6_56_0_1 Length  2455    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_034610.1 Mus musculus heat shock protein 90, alpha (cytosolic), class A member 1 0.0 996-1745 750 1
NP_001017963.2 Homo sapiens heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0 996-1745 750 1
NP_999138.1 Sus scrofa heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0 996-1745 750 1

19 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF110942 SSF HSP90 C-terminal domain 3.92E-40 1837-2202 366 1
PF00183 PFAM IPR001404 Hsp90 protein 9.9E-82 1732-2319 588 1
PTHR11528 PANTHER IPR001404 HEAT SHOCK PROTEIN 90 1.0E-122 1744-2319 576 1
PF00183 PFAM IPR001404 Hsp90 protein 7.5E-176 729-1745 1017 1
SM00387 SMART IPR003594 Histidine kinase-like ATPases 1.2E-6 261-722 462 1
G3DSA:3.30.565.10 GENE3D IPR003594   1.4E-95 984-1028 45 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.65E-83 687-737 51 1
SSF55874 SSF IPR003594 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3.35E-72 195-815 621 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.65E-83 459-509 51 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.65E-83 405-455 51 1
PTHR11528 PANTHER IPR001404 HEAT SHOCK PROTEIN 90 0.0 174-1745 1572 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.65E-83 195-254 60 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.65E-83 741-794 54 1
PS00298 PROSITE IPR019805 Heat shock hsp90 proteins family signature. 0.0 255-281 27 1
SSF54211 SSF IPR020568 Ribosomal protein S5 domain 2-like 2.05E-106 1002-1748 747 1
PF13589 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 8.5E-12 258-620 363 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.65E-83 258-323 66 1
G3DSA:3.30.565.10 GENE3D IPR003594   1.4E-95 195-800 606 1
PR00775 PRINTS IPR020575 90kDa heat shock protein signature 2.65E-83 534-599 66 1

11 ORFs

Contig Location Length Strand Sequence
177-1763 1587 1
1735-2322 588 1
326-526 201 -1
856-996 141 1
639-773 135 -1
590-712 123 -1
2231-2347 117 1
2338-2454 117 -1
739-852 114 1
1536-1640 105 -1
1917-2018 102 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105969 3.7E-253 3 842.4 0.6382892 186-1752 1567 1
TF300686 1.8E-299 3 994.5 0.67617106 195-1854 1660 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)