Contig : dd_Smed_v6_5455_0_1 S. mediterranea

Id  dd_Smed_v6_5455_0_1 Length  457    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer


GO Displayer


3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006823675.1 Saccoglossus kowalevskii protein PLANT CADMIUM RESISTANCE 2-like 1.0E-17 66-362 297 1
XP_003382497.1 Amphimedon queenslandica cell number regulator 3-like 2.0E-17 60-374 315 1
XP_002129134.1 Ciona intestinalis protein PLANT CADMIUM RESISTANCE 2-like 5.0E-17 60-380 321 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR15907 PANTHER FAMILY NOT NAMED 4.9E-26 60-350 291 1
TIGR01571 TIGRFAMs IPR006461 A_thal_Cys_rich: uncharacterized Cys-rich domain 1.5E-22 66-344 279 1
PF04749 PFAM IPR006461 PLAC8 family 6.0E-21 69-338 270 1

3 ORFs

Contig Location Length Strand Sequence
60-380 321 1
58-225 168 -1
1-141 141 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330308 4.6E-25 3 87.7 0.6061269 69-345 277 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)