Transcript : dd_Smed_v6_5455_0_1 S. mediterranea

Length  457     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006823675.1 Saccoglossus kowalevskii protein PLANT CADMIUM RESISTANCE 2-like 1.0E-17 66-362 297 1
XP_003382497.1 Amphimedon queenslandica cell number regulator 3-like 2.0E-17 60-374 315 1
XP_002129134.1 Ciona intestinalis protein PLANT CADMIUM RESISTANCE 2-like 5.0E-17 60-380 321 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR15907 PANTHER FAMILY NOT NAMED 4.9E-26 60-350 291 1
TIGR01571 TIGRFAMs IPR006461 A_thal_Cys_rich: uncharacterized Cys-rich domain 1.5E-22 66-344 279 1
PF04749 PFAM IPR006461 PLAC8 family 6.0E-21 69-338 270 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
60-380 321 1
58-225 168 -1
1-141 141 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330308 4.6E-25 3 87.7 0.6061269 69-345 277 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)