Contig : dd_Smed_v6_544_0_1 S. mediterranea

Id  dd_Smed_v6_544_0_1 Length  1820    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_031663.1 Mus musculus chaperonin containing Tcp1, subunit 5 (epsilon) 0.0 111-1715 1605 1
NP_036205.1 Homo sapiens chaperonin containing TCP1, subunit 5 (epsilon) 0.0 111-1715 1605 1
NP_989340.1 Xenopus (Silurana) tropicalis chaperonin containing TCP1, subunit 5 (epsilon) 0.0 111-1715 1605 1

20 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.50.7.10 GENE3D IPR027409 GroEL 4.9E-58 768-1250 483 1
SSF52029 SSF IPR027409 GroEL apical domain-like 5.83E-53 762-1265 504 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 1.59E-28 393-449 57 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 1.59E-28 303-356 54 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 1.59E-28 1251-1316 66 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 1.59E-28 237-284 48 1
PTHR11353 PANTHER IPR002423 CHAPERONIN 2.2E-273 114-1703 1590 1
SSF54849 SSF GroEL-intermediate domain like 2.69E-28 1236-1346 111 1
SSF54849 SSF GroEL-intermediate domain like 2.69E-28 579-773 195 1
PF00118 PFAM IPR002423 TCP-1/cpn60 chaperonin family 6.5E-139 231-1697 1467 1
PS00750 PROSITE IPR002194 Chaperonins TCP-1 signature 1. 0.0 246-281 36 1
PS00995 PROSITE IPR002194 Chaperonins TCP-1 signature 3. 0.0 393-416 24 1
G3DSA:1.10.560.10 GENE3D IPR027413 GROEL, domain 1 1.7E-87 135-554 420 1
G3DSA:1.10.560.10 GENE3D IPR027413 GROEL, domain 1 1.7E-87 1344-1697 354 1
G3DSA:3.30.260.10 GENE3D IPR027410 GROEL, domain 2 8.8E-33 579-764 186 1
G3DSA:3.30.260.10 GENE3D IPR027410 GROEL, domain 2 8.8E-33 1254-1340 87 1
SSF48592 SSF IPR002423 GroEL equatorial domain-like 1.96E-80 174-563 390 1
SSF48592 SSF IPR002423 GroEL equatorial domain-like 1.96E-80 1347-1697 351 1
PR00304 PRINTS IPR017998 Tailless complex polypeptide 1 (chaperone) signature 1.59E-28 1353-1388 36 1
TIGR02343 TIGRFAMs IPR012718 chap_CCT_epsi: T-complex protein 1, epsilon subunit 5.9E-280 120-1703 1584 1

5 ORFs

Contig Location Length Strand Sequence
96-1733 1638 1
563-850 288 -1
1049-1222 174 -1
212-331 120 -1
1342-1452 111 -1

8 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105638 0.0 3 1158.6 0.8791209 120-1719 1600 1
TF105649 3.2E-109 3 365.4 0.82637364 195-1698 1504 1
TF105645 3.0E-98 3 329.5 0.828022 198-1704 1507 1
TF105641 2.9E-91 3 306.2 0.81813186 207-1695 1489 1
TF106333 1.4E-75 3 254.6 0.8164835 213-1698 1486 1
TF106331 8.6E-85 3 285.0 0.81153846 231-1707 1477 1
TF106332 2.3E-101 3 339.5 0.77032965 297-1698 1402 1
TF105699 8.3E-48 3 161.6 0.52307695 747-1698 952 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)