Transcript : dd_Smed_v6_5419_0_1 S. mediterranea

Length  1253     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003395.1 Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 1.0E-101 100-825 726 1
NP_061223.2 Mus musculus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide 6.0E-100 100-825 726 1
XP_004612533.1 Sorex araneus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide 5.0E-102 100-825 726 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00796 PROSITE IPR023409 14-3-3 proteins signature 1. 0.0 214-243 30 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 616-693 78 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 535-612 78 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 697-783 87 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 337-408 72 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 430-495 66 1
G3DSA:1.20.190.20 GENE3D IPR023410   8.8E-105 97-777 681 1
SM00101 SMART IPR023410 14-3-3 homologues 5.3E-132 100-816 717 1
PF00244 PFAM IPR023410 14-3-3 protein 4.5E-106 100-795 696 1
SSF48445 SSF IPR023410 14-3-3 protein 1.57E-95 100-783 684 1
PS00797 PROSITE IPR023409 14-3-3 proteins signature 2. 0.0 724-780 57 1
PTHR18860 PANTHER IPR000308 14-3-3 PROTEIN 5.8E-159 91-816 726 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 196-282 87 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
46-825 780 1
206-385 180 1
2-169 168 1
784-933 150 -1
791-907 117 1
726-839 114 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF102002 1.8E-115 1 385.5 0.56823623 102-813 712 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)