Contig : dd_Smed_v6_5419_0_1 S. mediterranea

Id  dd_Smed_v6_5419_0_1 Length  1253    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003395.1 Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 1.0E-101 100-825 726 1
NP_061223.2 Mus musculus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide 6.0E-100 100-825 726 1
XP_004612533.1 Sorex araneus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide 5.0E-102 100-825 726 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00796 PROSITE IPR023409 14-3-3 proteins signature 1. 0.0 214-243 30 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 616-693 78 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 535-612 78 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 697-783 87 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 337-408 72 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 430-495 66 1
G3DSA:1.20.190.20 GENE3D IPR023410   8.8E-105 97-777 681 1
SM00101 SMART IPR023410 14-3-3 homologues 5.3E-132 100-816 717 1
PF00244 PFAM IPR023410 14-3-3 protein 4.5E-106 100-795 696 1
SSF48445 SSF IPR023410 14-3-3 protein 1.57E-95 100-783 684 1
PS00797 PROSITE IPR023409 14-3-3 proteins signature 2. 0.0 724-780 57 1
PTHR18860 PANTHER IPR000308 14-3-3 PROTEIN 5.8E-159 91-816 726 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.5E-77 196-282 87 1

6 ORFs

Contig Location Length Strand Sequence
46-825 780 1
206-385 180 1
2-169 168 1
784-933 150 -1
791-907 117 1
726-839 114 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF102002 1.8E-115 1 385.5 0.56823623 102-813 712 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)