Transcript : dd_Smed_v6_5406_0_1 S. mediterranea

Length  938     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005113030.1 Aplysia californica major egg antigen-like 3.0E-9 152-766 615 1
NP_503507.1 Caenorhabditis elegans Protein HSP-16.2 1.0E-5 539-817 279 1
XP_003375704.1 Trichinella spiralis heat shock protein beta-1 1.0E-5 431-784 354 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00011 PFAM IPR002068 Hsp20/alpha crystallin family 1.6E-5 116-373 258 1
PS01031 PROFILE IPR002068 Heat shock hsp20 proteins family profile. 8.903 566-760 195 1
SSF49764 SSF IPR008978 HSP20-like chaperones 2.77E-5 89-373 285 1
PF00011 PFAM IPR002068 Hsp20/alpha crystallin family 3.3E-7 542-811 270 1
PS01031 PROFILE IPR002068 Heat shock hsp20 proteins family profile. 8.809 95-355 261 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
32-862 831 1
63-176 114 1
833-937 105 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)