Contig : dd_Smed_v6_5406_0_1 S. mediterranea

Id  dd_Smed_v6_5406_0_1 Length  938    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005113030.1 Aplysia californica small heat shock protein p36-like 3.0E-9 152-766 615 1
NP_503507.1 Caenorhabditis elegans Protein HSP-16.2 1.0E-5 539-817 279 1
XP_003375704.1 Trichinella spiralis heat shock protein beta-1 1.0E-5 431-784 354 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00011 PFAM IPR002068 Hsp20/alpha crystallin family 1.6E-5 116-373 258 1
PS01031 PROFILE IPR002068 Heat shock hsp20 proteins family profile. 8.903 566-760 195 1
SSF49764 SSF IPR008978 HSP20-like chaperones 2.77E-5 89-373 285 1
PF00011 PFAM IPR002068 Hsp20/alpha crystallin family 3.3E-7 542-811 270 1
PS01031 PROFILE IPR002068 Heat shock hsp20 proteins family profile. 8.809 95-355 261 1

3 ORFs

Contig Location Length Strand Sequence
32-862 831 1
63-176 114 1
833-937 105 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)