Contig : dd_Smed_v6_532_0_1 S. mediterranea

Id  dd_Smed_v6_532_0_1 Length  783    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002098.1 Homo sapiens H3 histone, family 3A 4.0E-90 133-540 408 1
XP_894986.1 Mus musculus H3 histone, family 3C 2.0E-88 133-540 408 1
XP_003997209.2 Felis catus H3 histone, family 3B (H3.3B) 4.0E-90 133-546 414 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11426 PANTHER IPR000164 HISTONE H3 2.4E-135 121-537 417 1
PS00959 PROSITE IPR000164 Histone H3 signature 2. 0.0 331-354 24 1
SSF47113 SSF IPR009072 Histone-fold 1.02E-56 136-528 393 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 304-354 51 1
G3DSA:1.10.20.10 GENE3D IPR009072 Histone, subunit A 2.2E-85 136-531 396 1
PS00322 PROSITE IPR000164 Histone H3 signature 1. 0.0 175-192 18 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 472-534 63 1
PF00125 PFAM IPR007125 Core histone H2A/H2B/H3/H4 6.5E-33 304-525 222 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 232-294 63 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 424-471 48 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 370-423 54 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 181-222 42 1
SM00428 SMART IPR000164 Histone H3 9.5E-74 232-537 306 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 139-180 42 1

1 ORFs

Contig Location Length Strand Sequence
133-540 408 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF343899 3.9E-48 4 163.0 0.5274585 129-543 415 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)