Transcript : dd_Smed_v6_532_0_1 S. mediterranea

Length  783     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: JX070082.1, histone H3 mRNA - complete cds
EST: KC916784.1, clone PL030012A10A05 histone H3 mRNA - partial cds
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002098.1 Homo sapiens H3 histone, family 3A 4.0E-90 133-540 408 1
XP_894986.1 Mus musculus H3 histone, family 3C 2.0E-88 133-540 408 1
XP_003997209.2 Felis catus H3 histone, family 3B (H3.3B) 4.0E-90 133-546 414 1

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11426 PANTHER IPR000164 HISTONE H3 2.4E-135 121-537 417 1
PS00959 PROSITE IPR000164 Histone H3 signature 2. 0.0 331-354 24 1
SSF47113 SSF IPR009072 Histone-fold 1.02E-56 136-528 393 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 304-354 51 1
G3DSA:1.10.20.10 GENE3D IPR009072 Histone, subunit A 2.2E-85 136-531 396 1
PS00322 PROSITE IPR000164 Histone H3 signature 1. 0.0 175-192 18 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 472-534 63 1
PF00125 PFAM IPR007125 Core histone H2A/H2B/H3/H4 6.5E-33 304-525 222 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 232-294 63 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 424-471 48 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 370-423 54 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 181-222 42 1
SM00428 SMART IPR000164 Histone H3 9.5E-74 232-537 306 1
PR00622 PRINTS IPR000164 Histone H3 signature 3.09E-85 139-180 42 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
133-540 408 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF343899 3.9E-48 4 163.0 0.5274585 129-543 415 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)