Contig : dd_Smed_v6_526_0_1 S. mediterranea

Id  dd_Smed_v6_526_0_1 Length  1499    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000678.1 Homo sapiens adenosylhomocysteinase 0.0 89-1378 1290 1
NP_511164.2 Drosophila melanogaster Adenosylhomocysteinase at 13 0.0 83-1378 1296 1
NP_057870.3 Mus musculus S-adenosylhomocysteine hydrolase 0.0 89-1378 1290 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF52283 SSF Formate/glycerate dehydrogenase catalytic domain-like 1.36E-119 1139-1375 237 1
SSF52283 SSF Formate/glycerate dehydrogenase catalytic domain-like 1.36E-119 89-649 561 1
PS00738 PROSITE IPR020082 S-adenosyl-L-homocysteine hydrolase signature 1. 0.0 311-352 42 1
PF00670 PFAM IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 1.7E-81 653-1135 483 1
G3DSA:3.40.50.1480 GENE3D   6.6E-144 1139-1375 237 1
G3DSA:3.40.50.1480 GENE3D   6.6E-144 95-655 561 1
G3DSA:3.40.50.720 GENE3D IPR016040 NAD(P)-binding Rossmann-like Domain 3.8E-48 659-1132 474 1
PS00739 PROSITE IPR020082 S-adenosyl-L-homocysteine hydrolase signature 2. 0.0 719-766 48 1
PF05221 PFAM IPR000043 S-adenosyl-L-homocysteine hydrolase 4.5E-143 95-1372 1278 1
SM00996 SMART IPR000043 S-adenosyl-L-homocysteine hydrolase 2.4E-303 95-1372 1278 1
SM00997 SMART IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 1.4E-104 653-1135 483 1
SSF51735 SSF NAD(P)-binding Rossmann-fold domains 1.17E-72 653-1135 483 1
PTHR23420 PANTHER IPR000043 ADENOSYLHOMOCYSTEINASE 0.0 89-1375 1287 1
TIGR00936 TIGRFAMs IPR000043 ahcY: adenosylhomocysteinase 2.9E-201 98-1351 1254 1

7 ORFs

Contig Location Length Strand Sequence
68-1378 1311 1
833-1087 255 -1
787-966 180 -1
1253-1411 159 -1
314-442 129 -1
339-461 123 1
558-677 120 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300415 2.3E-261 2 867.0 0.8092061 165-1377 1213 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)