Transcript : dd_Smed_v6_52258_0_1 S. mediterranea

Length  520     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002314661.1 Populus trichocarpa calmodulin 8 family protein 2.0E-31 32-472 441 1
NP_193200.1 Arabidopsis thaliana calmodulin-like protein 8 6.0E-30 41-472 432 1
XP_002517054.1 Ricinus communis calmodulin, putative 2.0E-28 53-469 417 1

17 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF13499 PFAM IPR011992 EF-hand domain pair 2.1E-15 65-244 180 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 11.026 380-481 102 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 419-454 36 1
SSF47473 SSF EF-hand 1.01E-42 32-472 441 1
PF13499 PFAM IPR011992 EF-hand domain pair 4.0E-13 287-466 180 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 89-124 36 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 15.071 50-154 105 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.63 284-367 84 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 14.96 158-262 105 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 197-232 36 1
PS00303 PROSITE IPR001751 S-100/ICaBP type calcium binding protein signature. 0.0 182-244 63 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 12.226 272-376 105 1
PTHR10891 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1.2E-43 53-466 414 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.2E-45 32-472 441 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 7.5E-5 392-475 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 1.8E-5 170-253 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 8.1E-7 62-145 84 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
17-484 468 1
343-495 153 -1
16-159 144 -1
383-520 138 -1

11 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351552 1.4E-22 2 79.4 0.8096154 36-456 421 1
TF328393 8.9E-4 2 17.3 0.40576923 36-246 211 1
TF339519 9.5E-27 2 92.5 0.8326923 39-471 433 1
TF318191 3.8E-42 2 143.7 0.7980769 54-468 415 1
TF354258 7.8E-40 2 135.8 0.7980769 54-468 415 1
TF101141 8.4E-29 2 99.6 0.8096154 54-474 421 1
TF334804 5.7E-26 2 90.6 0.775 57-459 403 1
TF313209 0.0022 2 16.0 0.4576923 138-375 238 1
TF329255 4.6E-6 2 24.9 0.56153846 177-468 292 1
TF333971 5.1E-4 2 19.3 0.52115387 186-456 271 1
TF105558 0.0046 2 15.5 0.52692306 186-459 274 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)