Transcript : dd_Smed_v6_516_0_1 S. mediterranea

Length  488     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066215.1, clone HB.6.12f unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003367195.1 Trichinella spiralis putative ubiquitin family protein 6.0E-38 2-205 204 1
XP_003697063.1 Apis florea polyubiquitin 6.0E-38 2-205 204 1
XP_004934049.1 Bombyx mori polyubiquitin-like 7.0E-38 2-205 204 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 30.713 8-232 225 1
SM00213 SMART IPR000626 Ubiquitin homologues 1.2E-35 8-220 213 1
SSF54236 SSF IPR029071 Ubiquitin-like 8.71E-36 5-232 228 1
PR00348 PRINTS IPR019956 Ubiquitin signature 9.74E-40 164-226 63 1
PF00240 PFAM IPR000626 Ubiquitin family 9.1E-36 23-226 204 1
PS00299 PROSITE IPR019954 Ubiquitin domain signature. 0.0 86-160 75 1
PR00348 PRINTS IPR019956 Ubiquitin signature 9.74E-40 38-97 60 1
PR00348 PRINTS IPR019956 Ubiquitin signature 9.74E-40 101-160 60 1
PTHR10666 PANTHER UBIQUITIN 3.7E-66 2-232 231 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 2.3E-51 5-229 225 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
2-235 234 1

16 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354256 2.6E-61 2 206.3 0.48770493 3-240 238 1
TF300820 7.9E-58 2 195.3 0.49385247 3-243 241 1
TF352129 3.5E-54 2 183.4 0.4692623 9-237 229 1
TF338379 4.8E-33 2 113.4 0.46311477 9-234 226 1
TF300201 5.8E-27 2 93.5 0.46311477 9-234 226 1
TF313779 6.8E-22 2 77.7 0.4692623 9-237 229 1
TF354228 1.7E-21 2 76.0 0.44467214 9-225 217 1
TF354229 4.0E-19 2 67.3 0.40778688 12-210 199 1
TF106434 5.5E-13 2 46.6 0.43237704 12-222 211 1
TF314412 8.0E-10 2 36.5 0.4262295 15-222 208 1
TF314529 1.0E-18 2 66.2 0.43237704 18-228 211 1
TF328437 4.6E-11 2 40.3 0.41393444 21-222 202 1
TF333421 2.5E-7 2 28.9 0.41393444 24-225 202 1
TF300072 4.2E-39 2 132.3 0.43237704 27-237 211 1
TF105705 1.8E-8 2 32.1 0.42008197 30-234 205 1
TF353890 3.5E-27 5 94.0 0.46516395 2-230 229 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)