Contig : dd_Smed_v6_516_0_1 S. mediterranea

Id  dd_Smed_v6_516_0_1 Length  488    Open in Genome Browser

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Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003367195.1 Trichinella spiralis putative ubiquitin family protein 6.0E-38 2-205 204 1
XP_003697063.1 Apis florea polyubiquitin-A-like 6.0E-38 2-205 204 1
XP_004934049.1 Bombyx mori polyubiquitin-A-like 7.0E-38 2-205 204 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 30.713 8-232 225 1
SM00213 SMART IPR000626 Ubiquitin homologues 1.2E-35 8-220 213 1
SSF54236 SSF IPR029071 Ubiquitin-like 8.71E-36 5-232 228 1
PR00348 PRINTS IPR019956 Ubiquitin signature 9.74E-40 164-226 63 1
PF00240 PFAM IPR000626 Ubiquitin family 9.1E-36 23-226 204 1
PS00299 PROSITE IPR019954 Ubiquitin domain signature. 0.0 86-160 75 1
PR00348 PRINTS IPR019956 Ubiquitin signature 9.74E-40 38-97 60 1
PR00348 PRINTS IPR019956 Ubiquitin signature 9.74E-40 101-160 60 1
PTHR10666 PANTHER UBIQUITIN 3.7E-66 2-232 231 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 2.3E-51 5-229 225 1

1 ORFs

Contig Location Length Strand Sequence
2-235 234 1

16 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354256 2.6E-61 2 206.3 0.48770493 3-240 238 1
TF300820 7.9E-58 2 195.3 0.49385247 3-243 241 1
TF352129 3.5E-54 2 183.4 0.4692623 9-237 229 1
TF338379 4.8E-33 2 113.4 0.46311477 9-234 226 1
TF300201 5.8E-27 2 93.5 0.46311477 9-234 226 1
TF313779 6.8E-22 2 77.7 0.4692623 9-237 229 1
TF354228 1.7E-21 2 76.0 0.44467214 9-225 217 1
TF354229 4.0E-19 2 67.3 0.40778688 12-210 199 1
TF106434 5.5E-13 2 46.6 0.43237704 12-222 211 1
TF314412 8.0E-10 2 36.5 0.4262295 15-222 208 1
TF314529 1.0E-18 2 66.2 0.43237704 18-228 211 1
TF328437 4.6E-11 2 40.3 0.41393444 21-222 202 1
TF333421 2.5E-7 2 28.9 0.41393444 24-225 202 1
TF300072 4.2E-39 2 132.3 0.43237704 27-237 211 1
TF105705 1.8E-8 2 32.1 0.42008197 30-234 205 1
TF353890 3.5E-27 5 94.0 0.46516395 2-230 229 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)