Transcript : dd_Smed_v6_513_0_1 S. mediterranea

Length  1808     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066254.1, clone H.122.6b unknown mRNA sequence
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Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080111.1 Mus musculus propionyl Coenzyme A carboxylase, beta polypeptide 0.0 199-1725 1527 1
NP_000523.2 Homo sapiens propionyl-CoA carboxylase beta subunit 0.0 199-1725 1527 1
NP_741743.1 Caenorhabditis elegans Propionyl Coenzyme A Carboxylase Beta subunit 0.0 199-1725 1527 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01039 PFAM IPR000022 Carboxyl transferase domain 8.7E-194 280-1716 1437 1
PTHR22855 PANTHER ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOX 0.0 214-1722 1509 1
PS50989 PROFILE IPR011763 Acetyl-coenzyme A carboxyltransferase domain C-terminal region profile. 80.909 868-1698 831 1
G3DSA:3.90.226.10 GENE3D IPR029045 2-enoyl-CoA Hydratase; Chain A, domain 1 1.6E-83 229-945 717 1
G3DSA:3.90.226.10 GENE3D IPR029045 2-enoyl-CoA Hydratase; Chain A, domain 1 9.1E-95 964-1722 759 1
SSF52096 SSF IPR029045 ClpP/crotonase 4.51E-83 871-1722 852 1
SSF52096 SSF IPR029045 ClpP/crotonase 8.71E-75 220-948 729 1
PS50980 PROFILE IPR011762 Acetyl-coenzyme A carboxyltransferase domain N-terminal region profile. 46.721 223-864 642 1
PTHR22855:SF14 PANTHER PROPIONYL-COA CARBOXYLASE BETA CHAIN, MITOCHONDRIA 0.0 214-1722 1509 1

Genomics

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11 ORFs

Contig Location Length Strand Sequence
112-1725 1614 1
1463-1729 267 1
1211-1429 219 1
1179-1328 150 -1
1300-1443 144 -1
285-428 144 -1
893-1027 135 1
385-516 132 -1
437-556 120 1
1653-1769 117 1
581-688 108 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300446 3.9E-73 1 245.8 0.71570796 219-1512 1294 1
TF314350 0.0 1 1032.3 0.82853985 228-1725 1498 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)