Contig : dd_Smed_v6_513_0_1 S. mediterranea

Id  dd_Smed_v6_513_0_1 Length  1808    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080111.1 Mus musculus propionyl Coenzyme A carboxylase, beta polypeptide 0.0 199-1725 1527 1
NP_000523.2 Homo sapiens propionyl CoA carboxylase, beta polypeptide 0.0 199-1725 1527 1
NP_741743.1 Caenorhabditis elegans Protein PCCB-1 0.0 199-1725 1527 1

9 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01039 PFAM IPR000022 Carboxyl transferase domain 8.7E-194 280-1716 1437 1
PTHR22855 PANTHER ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOX 0.0 214-1722 1509 1
PS50989 PROFILE IPR011763 Acetyl-coenzyme A carboxyltransferase domain C-terminal region profile. 80.909 868-1698 831 1
G3DSA:3.90.226.10 GENE3D IPR029045 2-enoyl-CoA Hydratase; Chain A, domain 1 1.6E-83 229-945 717 1
G3DSA:3.90.226.10 GENE3D IPR029045 2-enoyl-CoA Hydratase; Chain A, domain 1 9.1E-95 964-1722 759 1
SSF52096 SSF IPR029045 ClpP/crotonase 4.51E-83 871-1722 852 1
SSF52096 SSF IPR029045 ClpP/crotonase 8.71E-75 220-948 729 1
PS50980 PROFILE IPR011762 Acetyl-coenzyme A carboxyltransferase domain N-terminal region profile. 46.721 223-864 642 1
PTHR22855:SF14 PANTHER PROPIONYL-COA CARBOXYLASE BETA CHAIN, MITOCHONDRIA 0.0 214-1722 1509 1

11 ORFs

Contig Location Length Strand Sequence
112-1725 1614 1
1463-1729 267 1
1211-1429 219 1
1179-1328 150 -1
1300-1443 144 -1
285-428 144 -1
893-1027 135 1
385-516 132 -1
437-556 120 1
1653-1769 117 1
581-688 108 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300446 3.9E-73 1 245.8 0.71570796 219-1512 1294 1
TF314350 0.0 1 1032.3 0.82853985 228-1725 1498 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)