Transcript : dd_Smed_v6_510_0_1 S. mediterranea

Length  1568     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068130.1, clone H.72.8a unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001419.1 Homo sapiens enolase 1, (alpha) 0.0 95-1390 1296 1
NP_001020559.1 Mus musculus enolase 1B, retrotransposed 0.0 95-1390 1296 1
NP_495900.1 Caenorhabditis elegans Enolase 0.0 95-1390 1296 1

15 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.20.20.120 GENE3D IPR029065 Enolase superfamily 1.2E-156 476-1384 909 1
PTHR11902 PANTHER IPR000941 ENOLASE 0.0 74-1387 1314 1
PF03952 PFAM IPR020811 Enolase, N-terminal domain 1.9E-56 101-493 393 1
G3DSA:3.30.390.10 GENE3D IPR029017 Enolase-like, N-terminal domain 8.0E-60 98-472 375 1
PR00148 PRINTS IPR000941 Enolase signature 2.08E-51 1115-1156 42 1
SSF54826 SSF IPR029017 Enolase N-terminal domain-like 9.06E-56 101-505 405 1
SSF51604 SSF IPR029065 Enolase C-terminal domain-like 7.64E-130 518-1381 864 1
PS00164 PROSITE IPR020809 Enolase signature. 0.0 1115-1153 39 1
PF00113 PFAM IPR020810 Enolase, C-terminal TIM barrel domain 9.8E-160 521-1384 864 1
PR00148 PRINTS IPR000941 Enolase signature 2.08E-51 413-460 48 1
PR00148 PRINTS IPR000941 Enolase signature 2.08E-51 1202-1252 51 1
PR00148 PRINTS IPR000941 Enolase signature 2.08E-51 1046-1078 33 1
PR00148 PRINTS IPR000941 Enolase signature 2.08E-51 197-238 42 1
PR00148 PRINTS IPR000941 Enolase signature 2.08E-51 584-622 39 1
TIGR01060 TIGRFAMs IPR000941 eno: phosphopyruvate hydratase 7.7E-169 101-1378 1278 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
95-1390 1296 1
530-667 138 -1
1262-1384 123 -1
828-944 117 1
773-889 117 -1
879-983 105 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300391 0.0 2 1024.4 0.8195153 108-1392 1285 1
TF354238 4.1E-63 2 212.6 0.60714287 414-1365 952 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)