Contig : dd_Smed_v6_50_0_1 S. mediterranea

Id  dd_Smed_v6_50_0_1 Length  1119    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003387556.1 Amphimedon queenslandica ADP,ATP carrier protein-like 3.0E-156 147-1031 885 1
XP_005107474.1 Aplysia californica ADP,ATP carrier protein 3, mitochondrial-like 4.0E-152 147-1031 885 1
NP_001187478.1 Ictalurus punctatus ADP/ATP carrier protein 3 2.0E-150 126-1031 906 1

21 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.12E-27 387-422 36 1
SSF103506 SSF IPR023395 Mitochondrial carrier 7.19E-70 147-998 852 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.18E-58 165-203 39 1
PTHR24089 PANTHER FAMILY NOT NAMED 2.7E-168 120-1031 912 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 1.1E-22 468-743 276 1
G3DSA:1.50.40.10 GENE3D IPR023395 Mitochondrial carrier domain 6.8E-72 150-1010 861 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 21.869 462-737 276 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 3.5E-21 147-434 288 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.18E-58 354-413 60 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 1.3E-16 756-1016 261 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.18E-58 507-560 54 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.12E-27 462-500 39 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.12E-27 288-350 63 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.18E-58 204-245 42 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.12E-27 771-818 48 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.18E-58 783-848 66 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 22.127 162-428 267 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.12E-27 156-191 36 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 20.175 756-1013 258 1
PTHR24089:SF31 PANTHER ADP,ATP CARRIER PROTEIN-RELATED 2.7E-168 120-1031 912 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.18E-58 657-710 54 1

6 ORFs

Contig Location Length Strand Sequence
120-1034 915 1
722-1117 396 -1
936-1118 183 -1
601-738 138 -1
251-373 123 -1
10-120 111 1

9 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300743 2.5E-166 3 554.1 0.7649687 156-1011 856 1
TF323211 3.1E-25 3 87.5 0.69258267 168-942 775 1
TF354298 2.0E-45 3 153.8 0.71671134 180-981 802 1
TF313492 2.3E-18 3 64.0 0.5960679 180-846 667 1
TF314806 5.1E-28 3 96.5 0.49151027 186-735 550 1
TF351739 1.6E-17 3 61.9 0.42448616 207-681 475 1
TF300894 3.5E-14 3 50.9 0.40840036 285-741 457 1
TF332793 2.4E-21 3 74.8 0.4512958 489-993 505 1
TF324772 9.0E-9 3 32.9 0.4030384 492-942 451 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)