Transcript : dd_Smed_v6_50260_0_1 S. mediterranea

Length  403     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_780720.1 Mus musculus family with sequence similarity 78, member A 2.0E-6 18-269 252 1
NP_203745.2 Homo sapiens family with sequence similarity 78 member A 2.0E-6 18-269 252 1
XP_006640829.1 Lepisosteus oculatus protein FAM78A-like 6.0E-8 3-266 264 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR31655 PANTHER FAMILY NOT NAMED 1.0E-30 18-269 252 1
PTHR31655:SF1 PANTHER SUBFAMILY NOT NAMED 1.0E-30 18-269 252 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
3-401 399 1
299-403 105 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF329533 1.3E-26 3 92.0 0.6203474 18-267 250 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)