Transcript : dd_Smed_v6_4_1_1 S. mediterranea

Length  3719     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: AY068362.1, unknown mRNA sequence
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_001900327.1 Brugia malayi Senescence-associated protein 4.0E-45 3103-3285 183 -1
XP_665229.1 Cryptosporidium hominis TU502 senescence-associated protein 4.0E-36 2873-3070 198 -1
XP_002139698.1 Cryptosporidium muris RN66 senescence-associated protein 2.0E-35 2849-3070 222 -1

0 Domain Sequence Features

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

15 ORFs

Contig Location Length Strand Sequence
867-1109 243 -1
433-657 225 1
1370-1585 216 1
194-394 201 1
3449-3640 192 1
1192-1371 180 -1
131-304 174 -1
938-1078 141 -1
2936-3067 132 1
1835-1963 129 -1
1185-1307 123 1
3079-3192 114 -1
1229-1342 114 -1
2570-2677 108 1
2631-2735 105 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)