Contig : dd_Smed_v6_4964_0_2 S. mediterranea

Id  dd_Smed_v6_4964_0_2 Length  886    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_477170.1 Drosophila melanogaster CG5771 gene product from transcript CG5771-RA 1.0E-64 90-716 627 1
NP_004654.1 Homo sapiens RAB11A, member RAS oncogene family 4.0E-62 90-611 522 1
XP_004997338.1 Salpingoeca rosetta tubulovesicle-associated protein 5.0E-66 87-716 630 1

16 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR24073:SF87 PANTHER DRAB11 2.9E-93 93-713 621 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.0E-40 186-233 48 1
PF00071 PFAM IPR001806 Ras family 5.3E-57 120-596 477 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.0E-40 240-305 66 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.0E-40 423-461 39 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.79E-56 102-638 537 1
SM00174 SMART IPR003578 Rho (Ras homology) subfamily of Ras-like small GTPases 6.2E-13 123-602 480 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.1E-66 93-713 621 1
SM00175 SMART IPR003579 Rab subfamily of small GTPases 1.7E-87 117-602 486 1
PS51419 PROFILE small GTPase Rab1 family profile. 33.198 102-713 612 1
SM00173 SMART IPR020849 Ras subfamily of RAS small GTPases 2.1E-29 117-602 486 1
SM00176 SMART IPR002041 Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases 3.4E-5 132-719 588 1
TIGR00231 TIGRFAMs IPR005225 small_GTP: small GTP-binding protein domain 2.5E-33 111-572 462 1
PTHR24073 PANTHER FAMILY NOT NAMED 2.9E-93 93-713 621 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.0E-40 117-179 63 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 3.0E-40 528-593 66 1

3 ORFs

Contig Location Length Strand Sequence
3-722 720 1
489-608 120 -1
469-573 105 -1

34 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313106 1.9E-38 3 131.5 0.71557564 84-717 634 1
TF313448 1.7E-55 3 187.7 0.5530474 102-591 490 1
TF352279 1.6E-38 3 131.7 0.5462754 102-585 484 1
TF317494 7.0E-38 3 130.4 0.66478556 102-690 589 1
TF313199 3.8E-56 3 190.2 0.6884876 105-714 610 1
TF352278 1.1E-55 3 188.2 0.5598194 105-600 496 1
TF315926 5.7E-48 3 162.9 0.5632054 105-603 499 1
TF324491 2.8E-31 3 107.8 0.68510157 108-714 607 1
TF326442 4.2E-57 3 192.8 0.6783296 114-714 601 1
TF331879 3.3E-43 3 147.5 0.5293454 114-582 469 1
TF106302 3.4E-14 3 51.3 0.5293454 114-582 469 1
TF300803 4.4E-48 3 163.5 0.5395034 117-594 478 1
TF105605 2.3E-46 3 157.3 0.6376975 117-681 565 1
TF326626 3.4E-30 3 103.9 0.5090293 117-567 451 1
TF315072 3.2E-24 3 84.9 0.5564334 117-609 493 1
TF331746 1.2E-21 3 76.4 0.52257335 117-579 463 1
TF329319 2.1E-6 3 25.6 0.41422123 117-483 367 1
TF352281 1.9E-47 3 160.7 0.5598194 120-615 496 1
TF312895 1.2E-38 3 132.5 0.6376975 120-684 565 1
TF328564 2.8E-38 3 130.8 0.5530474 120-609 490 1
TF352282 7.3E-35 3 119.3 0.48871332 120-552 433 1
TF313852 1.1E-33 3 116.0 0.5462754 120-603 484 1
TF300837 1.8E-26 3 92.0 0.5428894 120-600 481 1
TF314986 8.7E-25 3 86.5 0.5361174 120-594 475 1
TF330887 1.3E-20 3 72.8 0.49548534 120-558 439 1
TF331219 3.5E-11 3 42.2 0.4819413 120-546 427 1
TF350739 9.0E-11 3 39.7 0.51241535 120-573 454 1
TF105461 6.3E-7 3 29.7 0.51918733 120-579 460 1
TF300099 2.0E-74 3 250.2 0.67155755 126-720 595 1
TF323428 1.1E-46 3 158.7 0.5293454 129-597 469 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)