Transcript : dd_Smed_v6_4959_0_1 S. mediterranea

Length  1550     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_649104.1 Drosophila melanogaster Glycogen binding subunit 76A 9.0E-40 454-1038 585 1
XP_005095651.1 Aplysia californica glycogen-binding subunit 76A-like 4.0E-49 406-1038 633 1
XP_004526810.1 Ceratitis capitata glycogen-binding subunit 76A-like 6.0E-42 397-1038 642 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12307 PANTHER PROTEIN PHOSPHATASE 1 BINDING PROTEIN 8.3E-66 451-1026 576 1
PS51159 PROFILE IPR005036 CBM21 (carbohydrate binding type-21) domain profile. 22.688 706-1032 327 1
PF03370 PFAM IPR005036 Putative phosphatase regulatory subunit 6.5E-29 718-1026 309 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
253-1068 816 1
869-1075 207 1
353-469 117 1
769-885 117 -1
1061-1171 111 -1
447-554 108 -1
1243-1344 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)