Contig : dd_Smed_v6_4959_0_1 S. mediterranea

Id  dd_Smed_v6_4959_0_1 Length  1550    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_649104.1 Drosophila melanogaster Glycogen binding subunit 76A 9.0E-40 454-1038 585 1
XP_005095651.1 Aplysia californica glycogen-binding subunit 76A-like 4.0E-49 406-1038 633 1
XP_004526810.1 Ceratitis capitata glycogen-binding subunit 76A-like 6.0E-42 397-1038 642 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12307 PANTHER PROTEIN PHOSPHATASE 1 BINDING PROTEIN 8.3E-66 451-1026 576 1
PS51159 PROFILE IPR005036 CBM21 (carbohydrate binding type-21) domain profile. 22.688 706-1032 327 1
PF03370 PFAM IPR005036 Putative phosphatase regulatory subunit 6.5E-29 718-1026 309 1

7 ORFs

Contig Location Length Strand Sequence
253-1068 816 1
869-1075 207 1
353-469 117 1
769-885 117 -1
1061-1171 111 -1
447-554 108 -1
1243-1344 102 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)