Contig : dd_Smed_v6_49142_0_1 S. mediterranea

Id  dd_Smed_v6_49142_0_1 Length  684    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006723778.1 Homo sapiens LSM14B, SCD6 homolog B (S. cerevisiae) 6.0E-35 86-400 315 1
NP_808395.2 Mus musculus LSM14 homolog B (SCD6, S. cerevisiae) 1.0E-34 86-400 315 1
XP_008010249.1 Chlorocebus sabaeus LSM14B, SCD6 homolog B (S. cerevisiae) 7.0E-35 86-400 315 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR13586 PANTHER SCD6 PROTEIN-RELATED 3.8E-49 80-679 600 1
PTHR13586:SF2 PANTHER PROTEIN LSM14 HOMOLOG A 3.8E-49 80-679 600 1
SSF50182 SSF IPR010920 Sm-like ribonucleoproteins 1.16E-26 98-322 225 1
PF12701 PFAM IPR025609 Scd6-like Sm domain 2.3E-36 86-364 279 1

6 ORFs

Contig Location Length Strand Sequence
2-682 681 1
255-485 231 1
423-566 144 -1
197-331 135 -1
404-514 111 -1
513-614 102 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313514 4.7E-58 2 197.6 0.43567252 99-396 298 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)