Transcript : dd_Smed_v6_49142_0_1 S. mediterranea

Length  684     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006723778.1 Homo sapiens LSM14B, SCD6 homolog B (S. cerevisiae) 6.0E-35 86-400 315 1
NP_808395.2 Mus musculus LSM family member 14B 1.0E-34 86-400 315 1
XP_008010249.1 Chlorocebus sabaeus LSM14B, SCD6 homolog B (S. cerevisiae) 7.0E-35 86-400 315 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR13586 PANTHER SCD6 PROTEIN-RELATED 3.8E-49 80-679 600 1
PTHR13586:SF2 PANTHER PROTEIN LSM14 HOMOLOG A 3.8E-49 80-679 600 1
SSF50182 SSF IPR010920 Sm-like ribonucleoproteins 1.16E-26 98-322 225 1
PF12701 PFAM IPR025609 Scd6-like Sm domain 2.3E-36 86-364 279 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
2-682 681 1
255-485 231 1
423-566 144 -1
197-331 135 -1
404-514 111 -1
513-614 102 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313514 4.7E-58 2 197.6 0.43567252 99-396 298 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)