Contig : dd_Smed_v6_48_0_1 S. mediterranea

Id  dd_Smed_v6_48_0_1 Length  1258    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_004344432.1 Capsaspora owczarzaki ATCC 30864 cathepsin L2 3.0E-126 254-1171 918 1
XP_006813635.1 Saccoglossus kowalevskii cathepsin L1-like 3.0E-126 242-1171 930 1
XP_780713.1 Strongylocentrotus purpuratus cathepsin L-like 1.0E-125 248-1171 924 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54001 SSF Cysteine proteinases 1.29E-121 239-1165 927 1
PF00112 PFAM IPR000668 Papain family cysteine protease 9.0E-83 524-1162 639 1
PS00640 PROSITE IPR025661 Eukaryotic thiol (cysteine) proteases asparagine active site. 0.0 1055-1111 57 1
PF08246 PFAM IPR013201 Cathepsin propeptide inhibitor domain (I29) 1.5E-16 266-442 177 1
G3DSA:3.90.70.10 GENE3D Cysteine proteinases 8.7E-123 260-1168 909 1
PTHR12411 PANTHER IPR013128 CYSTEINE PROTEASE FAMILY C1-RELATED 1.1E-171 161-1168 1008 1
PS00139 PROSITE IPR000169 Eukaryotic thiol (cysteine) proteases cysteine active site. 0.0 578-610 33 1
PTHR12411:SF57 PANTHER CATHEPSIN L2 1.1E-171 161-1168 1008 1
SM00848 SMART IPR013201 Cathepsin propeptide inhibitor domain (I29) 2.6E-28 266-442 177 1
PR00705 PRINTS IPR000668 Papain cysteine protease (C1) family signature 1.5E-9 1055-1072 18 1
PR00705 PRINTS IPR000668 Papain cysteine protease (C1) family signature 1.5E-9 578-622 45 1
PR00705 PRINTS IPR000668 Papain cysteine protease (C1) family signature 1.5E-9 1010-1039 30 1
SM00645 SMART IPR000668 Papain family cysteine protease 2.6E-120 524-1165 642 1
PS00639 PROSITE IPR025660 Eukaryotic thiol (cysteine) proteases histidine active site. 0.0 1004-1033 30 1

6 ORFs

Contig Location Length Strand Sequence
176-1171 996 1
1007-1258 252 -1
663-887 225 -1
804-1004 201 1
793-930 138 -1
652-753 102 -1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF319730 6.1E-69 2 232.4 0.7615262 189-1146 958 1
TF318600 1.0E-50 2 172.6 0.45866454 225-801 577 1
TF342868 3.3E-106 2 355.0 0.72337043 258-1167 910 1
TF328985 2.0E-91 2 307.1 0.7138315 273-1170 898 1
TF331594 2.3E-69 2 233.8 0.69236887 273-1143 871 1
TF314550 1.2E-92 2 310.2 0.69952303 279-1158 880 1
TF337736 6.1E-38 2 129.6 0.54451513 420-1104 685 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)