Transcript : dd_Smed_v6_484_0_1 S. mediterranea

Length  1024     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611878.1 Drosophila melanogaster CG3186 gene product from transcript CG3186-RB 2.0E-48 56-520 465 1
XP_002552376.1 Lachancea thermotolerans CBS 6340 KLTH0C03476p 3.0E-52 56-511 456 1
XP_002424329.1 Pediculus humanus corporis eukaryotic translation initiation factor 5A, putative 8.0E-52 56-520 465 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF08207 PFAM IPR013185 Elongation factor P (EF-P) KOW-like domain 1.6E-4 122-262 141 1
PTHR11673 PANTHER IPR001884 TRANSLATION INITIATION FACTOR 5A-RELATED 1.8E-80 56-520 465 1
TIGR00037 TIGRFAMs IPR001884 eIF_5A: translation elongation factor IF5A 6.2E-42 107-502 396 1
SSF50249 SSF IPR012340 Nucleic acid-binding proteins 7.42E-21 308-514 207 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 5.52E-24 95-328 234 1
PS00302 PROSITE IPR019769 Eukaryotic initiation factor 5A hypusine signature. 0.0 200-220 21 1
PF01287 PFAM IPR020189 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 1.9E-26 305-508 204 1
G3DSA:2.30.30.30 GENE3D IPR014722   7.8E-33 95-301 207 1
G3DSA:2.40.50.140 GENE3D IPR012340 Nucleic acid-binding proteins 2.2E-26 308-514 207 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
56-523 468 1
145-300 156 -1
62-211 150 -1
355-456 102 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101534 1.3E-76 2 257.5 0.45214844 57-519 463 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)