Contig : dd_Smed_v6_481_0_1 S. mediterranea

Id  dd_Smed_v6_481_0_1 Length  585    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_357236.3 Mus musculus predicted gene 11449 2.0E-18 403-558 156 1
NP_000983.1 Homo sapiens ribosomal protein L29 3.0E-16 403-543 141 1
XP_004206186.1 Hydra vulgaris 60S ribosomal protein L29-like 7.0E-22 403-567 165 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12884 PANTHER IPR002673 60S RIBOSOMAL PROTEIN L29 3.8E-49 406-555 150 1
PF01779 PFAM IPR002673 Ribosomal L29e protein family 1.1E-25 409-525 117 1

4 ORFs

Contig Location Length Strand Sequence
382-585 204 -1
403-558 156 1
453-584 132 -1
24-125 102 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)