Transcript : dd_Smed_v6_481_0_1 S. mediterranea

Length  585     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_357236.3 Mus musculus predicted gene 11449 2.0E-18 403-558 156 1
NP_000983.1 Homo sapiens ribosomal protein L29 3.0E-16 403-543 141 1
XP_004206186.1 Hydra vulgaris 60S ribosomal protein L29-like 7.0E-22 403-567 165 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12884 PANTHER IPR002673 60S RIBOSOMAL PROTEIN L29 3.8E-49 406-555 150 1
PF01779 PFAM IPR002673 Ribosomal L29e protein family 1.1E-25 409-525 117 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
382-585 204 -1
403-558 156 1
453-584 132 -1
24-125 102 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)