Contig : dd_Smed_v6_477_0_1 S. mediterranea

Id  dd_Smed_v6_477_0_1 Length  1002    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_631937.1 Mus musculus placenta-specific 8 3.0E-5 326-625 300 1
NP_057703.1 Homo sapiens placenta-specific 8 4.0E-5 326-625 300 1
XP_005110122.1 Aplysia californica cell number regulator 10-like 1.0E-21 338-628 291 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF04749 PFAM IPR006461 PLAC8 family 1.3E-23 338-607 270 1
PTHR15907:SF27 PANTHER SUBFAMILY NOT NAMED 2.0E-33 329-607 279 1
TIGR01571 TIGRFAMs IPR006461 A_thal_Cys_rich: uncharacterized Cys-rich domain 7.2E-22 335-607 273 1
PTHR15907 PANTHER FAMILY NOT NAMED 2.0E-33 329-607 279 1

8 ORFs

Contig Location Length Strand Sequence
329-649 321 1
652-930 279 -1
464-724 261 -1
621-782 162 1
109-234 126 -1
2-124 123 1
345-461 117 1
3-113 111 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)