Transcript : dd_Smed_v6_477_0_1 S. mediterranea

Length  1002     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_631937.1 Mus musculus placenta-specific 8 3.0E-5 326-625 300 1
NP_057703.1 Homo sapiens placenta-specific 8 4.0E-5 326-625 300 1
XP_005110122.1 Aplysia californica cell number regulator 10-like 1.0E-21 338-628 291 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF04749 PFAM IPR006461 PLAC8 family 1.3E-23 338-607 270 1
PTHR15907:SF27 PANTHER SUBFAMILY NOT NAMED 2.0E-33 329-607 279 1
TIGR01571 TIGRFAMs IPR006461 A_thal_Cys_rich: uncharacterized Cys-rich domain 7.2E-22 335-607 273 1
PTHR15907 PANTHER FAMILY NOT NAMED 2.0E-33 329-607 279 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
329-649 321 1
652-930 279 -1
464-724 261 -1
621-782 162 1
109-234 126 -1
2-124 123 1
345-461 117 1
3-113 111 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)