Transcript : dd_Smed_v6_469_0_1 S. mediterranea

Length  831     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066199.1, clone HB.2.9b unknown mRNA sequence
AY066198.1, clone HB.8.4a unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003742041.1 Metaseiulus occidentalis histone H2A type 1-like 2.0E-40 109-486 378 1
XP_002764812.1 Perkinsus marinus ATCC 50983 histone H2A.1, putative 4.0E-40 109-468 360 1
XP_006817030.1 Saccoglossus kowalevskii probable histone H2A.1-like 7.0E-39 130-468 339 1

11 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.20.10 GENE3D IPR009072 Histone, subunit A 7.1E-48 124-471 348 1
SSF47113 SSF IPR009072 Histone-fold 4.94E-37 121-468 348 1
PR00620 PRINTS IPR002119 Histone H2A signature 1.43E-33 280-318 39 1
PR00620 PRINTS IPR002119 Histone H2A signature 1.43E-33 406-459 54 1
PR00620 PRINTS IPR002119 Histone H2A signature 1.43E-33 235-279 45 1
PTHR23430:SF5 PANTHER HISTONE H2A.6-RELATED 4.0E-69 112-468 357 1
PR00620 PRINTS IPR002119 Histone H2A signature 1.43E-33 148-213 66 1
PF00125 PFAM IPR007125 Core histone H2A/H2B/H3/H4 7.8E-24 160-378 219 1
PTHR23430 PANTHER HISTONE H2A 4.0E-69 112-468 357 1
PR00620 PRINTS IPR002119 Histone H2A signature 1.43E-33 364-399 36 1
SM00414 SMART IPR002119 Histone 2A 6.4E-56 115-474 360 1

Genomics

Predicted Gene Displayer

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4 ORFs

Contig Location Length Strand Sequence
109-504 396 1
261-443 183 -1
683-829 147 1
3-131 129 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF332276 6.8E-53 1 179.8 0.4488568 111-483 373 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)