Contig : dd_Smed_v6_4689_0_1 S. mediterranea

Id  dd_Smed_v6_4689_0_1 Length  2406    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006516161.1 Mus musculus membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) 1.0E-85 357-2258 1902 1
NP_001243479.1 Homo sapiens membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) 3.0E-85 357-2258 1902 1
XP_005099048.1 Aplysia californica MAGUK p55 subfamily member 5-like 6.0E-91 864-2258 1395 1

19 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50156 SSF IPR001478 PDZ domain-like 1.45E-17 855-1103 249 1
PS50052 PROFILE IPR008144 Guanylate kinase-like domain profile. 26.382 1677-2213 537 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.4E-22 1668-1760 93 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.4E-22 1944-2216 273 1
PF07653 PFAM IPR011511 Variant SH3 domain 6.7E-6 1164-1349 186 1
PTHR23122 PANTHER MEMBRANE-ASSOCIATED GUANYLATE KINASE (MAGUK) 3.6E-167 78-2282 2205 1
PF00625 PFAM IPR008145 Guanylate kinase 1.7E-28 1677-2213 537 1
PS50106 PROFILE IPR001478 PDZ domain profile. 14.596 870-1106 237 1
G3DSA:2.30.42.10 GENE3D IPR001478   9.5E-18 825-1106 282 1
PF00595 PFAM IPR001478 PDZ domain (Also known as DHR or GLGF) 1.8E-8 876-1094 219 1
G3DSA:2.30.30.40 GENE3D SH3 Domains 9.6E-23 1110-1541 432 1
SSF50044 SSF IPR001452 SH3-domain 6.96E-20 1137-1436 300 1
SM00326 SMART IPR001452 Src homology 3 domains 5.2E-4 1155-1370 216 1
PTHR23122:SF32 PANTHER MAGUK P55 SUBFAMILY MEMBER 5 3.6E-167 78-2282 2205 1
G3DSA:3.30.63.10 GENE3D Guanylate Kinase phosphate binding domain 2.4E-9 1797-1940 144 1
PS50002 PROFILE IPR001452 Src homology 3 (SH3) domain profile. 10.256 1146-1373 228 1
SM00228 SMART IPR001478 Domain present in PSD-95, Dlg, and ZO-1/2. 2.1E-10 894-1106 213 1
SM00072 SMART IPR008145 Guanylate kinase homologues. 5.8E-21 1674-2222 549 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 9.44E-31 1668-2246 579 1

6 ORFs

Contig Location Length Strand Sequence
33-2294 2262 1
247-423 177 1
2035-2190 156 -1
830-964 135 -1
2009-2134 126 -1
1616-1741 126 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)