Contig : dd_Smed_v6_467_0_1 S. mediterranea

Id  dd_Smed_v6_467_0_1 Length  1679    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_032644.3 Mus musculus malate dehydrogenase 1, NAD (soluble) 2.0E-135 185-1174 990 1
NP_005908.1 Homo sapiens malate dehydrogenase 1, NAD (soluble) 9.0E-135 185-1174 990 1
XP_002424808.1 Pediculus humanus corporis malate dehydrogenase, putative 7.0E-140 194-1174 981 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.50.720 GENE3D IPR016040 NAD(P)-binding Rossmann-like Domain 1.6E-56 194-640 447 1
PF00056 PFAM IPR001236 lactate/malate dehydrogenase, NAD binding domain 1.2E-34 203-637 435 1
PF02866 PFAM IPR022383 lactate/malate dehydrogenase, alpha/beta C-terminal domain 1.5E-44 650-1165 516 1
SSF56327 SSF IPR015955 LDH C-terminal domain-like 1.17E-61 650-1165 516 1
TIGR01759 TIGRFAMs IPR010945 MalateDH-SF1: malate dehydrogenase 1.2E-149 194-1156 963 1
PS00068 PROSITE IPR001252 Malate dehydrogenase active site signature. 0.0 647-682 36 1
TIGR01758 TIGRFAMs IPR011274 MDH_euk_cyt: malate dehydrogenase, NAD-dependent 1.9E-157 203-1162 960 1
PTHR23382 PANTHER IPR010945 MALATE DEHYDROGENASE 1.4E-210 182-1171 990 1
SSF51735 SSF NAD(P)-binding Rossmann-fold domains 1.03E-44 185-643 459 1
G3DSA:3.90.110.10 GENE3D IPR015955 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2 5.1E-76 647-1168 522 1

7 ORFs

Contig Location Length Strand Sequence
185-1174 990 1
1500-1679 180 -1
301-471 171 -1
920-1060 141 -1
659-775 117 -1
1547-1657 111 1
1-102 102 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105826 7.6E-229 2 761.0 0.58487195 195-1176 982 1
TF329007 3.8E-78 2 262.5 0.5652174 213-1161 949 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)