Transcript : dd_Smed_v6_4622_0_1 S. mediterranea

Length  1214     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006579.2 Homo sapiens sulfotransferase family 1C member 4 2.0E-42 343-1152 810 1
XP_005686709.1 Capra hircus sulfotransferase family, cytosolic, 1C, member 4 4.0E-48 313-1152 840 1
XP_007537401.1 Erinaceus europaeus sulfotransferase family, cytosolic, 1C, member 4 1.0E-47 343-1152 810 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11783 PANTHER SULFOTRANSFERASE (SULT) 1.1E-98 271-1155 885 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.24E-72 310-1140 831 1
PF00685 PFAM IPR000863 Sulfotransferase domain 3.7E-57 385-1131 747 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.7E-80 301-1140 840 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
271-1158 888 1
635-838 204 -1
873-1055 183 -1
302-442 141 1
343-477 135 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)