Contig : dd_Smed_v6_461_0_1 S. mediterranea

Id  dd_Smed_v6_461_0_1 Length  1411    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_732311.1 Drosophila melanogaster CG31196 gene product from transcript CG31196-RD 1.0E-86 108-809 702 1
NP_006752.1 Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 9.0E-86 108-809 702 1
XP_003703452.1 Megachile rotundata 14-3-3 protein epsilon-like 1.0E-90 108-809 702 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00101 SMART IPR023410 14-3-3 homologues 7.0E-134 117-836 720 1
PF00244 PFAM IPR023410 14-3-3 protein 2.5E-102 117-821 705 1
SSF48445 SSF IPR023410 14-3-3 protein 1.29E-93 108-806 699 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.7E-70 213-299 87 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.7E-70 558-635 78 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.7E-70 723-809 87 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.7E-70 639-716 78 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.7E-70 456-521 66 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.7E-70 363-434 72 1
PS00797 PROSITE IPR023409 14-3-3 proteins signature 2. 0.0 750-806 57 1
PTHR18860 PANTHER IPR000308 14-3-3 PROTEIN 2.7E-152 108-809 702 1
PS00796 PROSITE IPR023409 14-3-3 proteins signature 1. 0.0 231-260 30 1
G3DSA:1.20.190.20 GENE3D IPR023410   8.9E-104 108-803 696 1

6 ORFs

Contig Location Length Strand Sequence
108-839 732 1
1269-1409 141 -1
772-900 129 -1
989-1102 114 1
1127-1240 114 1
463-576 114 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF102002 1.1E-97 3 326.9 0.4939759 129-825 697 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)