Contig : dd_Smed_v6_458_0_2 S. mediterranea

Id  dd_Smed_v6_458_0_2 Length  251    Open in Genome Browser

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Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_061828.1 Homo sapiens ubiquitin B 2.0E-49 2-250 249 1
XP_003494613.1 Bombus impatiens polyubiquitin-A-like 5.0E-51 2-250 249 1
XP_006495477.1 Citrus sinensis polyubiquitin 3-like 4.0E-50 2-250 249 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00348 PRINTS IPR019956 Ubiquitin signature 2.02E-39 38-97 60 1
PR00348 PRINTS IPR019956 Ubiquitin signature 2.02E-39 164-226 63 1
PTHR10666 PANTHER UBIQUITIN 3.6E-70 8-247 240 1
PS00299 PROSITE IPR019954 Ubiquitin domain signature. 0.0 86-160 75 1
SSF54236 SSF IPR029071 Ubiquitin-like 6.22E-36 5-232 228 1
SM00213 SMART IPR000626 Ubiquitin homologues 1.2E-35 8-220 213 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 30.713 8-232 225 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 2.5E-53 8-244 237 1
PF00240 PFAM IPR000626 Ubiquitin family 1.2E-35 23-226 204 1
PR00348 PRINTS IPR019956 Ubiquitin signature 2.02E-39 101-160 60 1

1 ORFs

Contig Location Length Strand Sequence
2-250 249 1

32 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354256 8.9E-64 2 214.5 0.9482072 3-240 238 1
TF300820 1.9E-62 2 210.6 0.98406374 3-249 247 1
TF352129 5.8E-55 2 186.0 0.9123506 9-237 229 1
TF338379 7.8E-34 2 115.9 0.90039843 9-234 226 1
TF300201 8.3E-28 2 96.3 0.8884462 9-231 223 1
TF313779 1.3E-22 2 80.0 0.90039843 9-234 226 1
TF354228 3.6E-22 2 78.2 0.85258967 9-222 214 1
TF101216 3.6E-18 2 65.0 0.73306775 9-192 184 1
TF106434 9.6E-14 2 49.1 0.85258967 9-222 214 1
TF354229 6.4E-20 2 70.0 0.7928287 12-210 199 1
TF323925 8.0E-16 2 56.8 0.73306775 12-195 184 1
TF314412 1.1E-10 2 39.4 0.8286853 15-222 208 1
TF329469 6.9E-4 2 15.6 0.48207173 15-135 121 1
TF314529 2.1E-19 2 68.5 0.84063745 18-228 211 1
TF328437 7.0E-12 2 43.0 0.8047809 21-222 202 1
TF333421 4.3E-8 2 31.4 0.8047809 24-225 202 1
TF300072 4.2E-40 2 135.5 0.84063745 27-237 211 1
TF323449 9.2E-7 2 25.7 0.67330676 27-195 169 1
TF105705 3.0E-9 2 34.7 0.81673306 30-234 205 1
TF314172 3.1E-5 2 21.8 0.70916337 36-213 178 1
TF323180 6.1E-4 2 15.9 0.70916337 36-213 178 1
TF319739 4.3E-11 2 40.5 0.67330676 39-207 169 1
TF333280 3.6E-6 2 25.1 0.70916337 39-216 178 1
TF327176 1.5E-9 2 36.1 0.69721115 42-216 175 1
TF323486 1.7E-5 2 22.7 0.625498 42-198 157 1
TF102011 1.1E-5 2 23.6 0.625498 45-201 157 1
TF300908 4.1E-4 2 17.7 0.6494024 45-207 163 1
TF343343 2.2E-4 2 18.9 0.685259 48-219 172 1
TF327355 1.2E-4 2 19.6 0.57768923 51-195 145 1
TF300036 2.8E-29 2 102.0 0.625498 81-237 157 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)