Transcript : dd_Smed_v6_458_0_2 S. mediterranea

Length  251     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_061828.1 Homo sapiens ubiquitin B 2.0E-49 2-250 249 1
XP_003494613.1 Bombus impatiens polyubiquitin-B 5.0E-51 2-250 249 1
XP_006495477.1 Citrus sinensis polyubiquitin 11-like 4.0E-50 2-250 249 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00348 PRINTS IPR019956 Ubiquitin signature 2.02E-39 38-97 60 1
PR00348 PRINTS IPR019956 Ubiquitin signature 2.02E-39 164-226 63 1
PTHR10666 PANTHER UBIQUITIN 3.6E-70 8-247 240 1
PS00299 PROSITE IPR019954 Ubiquitin domain signature. 0.0 86-160 75 1
SSF54236 SSF IPR029071 Ubiquitin-like 6.22E-36 5-232 228 1
SM00213 SMART IPR000626 Ubiquitin homologues 1.2E-35 8-220 213 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 30.713 8-232 225 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 2.5E-53 8-244 237 1
PF00240 PFAM IPR000626 Ubiquitin family 1.2E-35 23-226 204 1
PR00348 PRINTS IPR019956 Ubiquitin signature 2.02E-39 101-160 60 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
2-250 249 1

32 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354256 8.9E-64 2 214.5 0.9482072 3-240 238 1
TF300820 1.9E-62 2 210.6 0.98406374 3-249 247 1
TF352129 5.8E-55 2 186.0 0.9123506 9-237 229 1
TF338379 7.8E-34 2 115.9 0.90039843 9-234 226 1
TF300201 8.3E-28 2 96.3 0.8884462 9-231 223 1
TF313779 1.3E-22 2 80.0 0.90039843 9-234 226 1
TF354228 3.6E-22 2 78.2 0.85258967 9-222 214 1
TF101216 3.6E-18 2 65.0 0.73306775 9-192 184 1
TF106434 9.6E-14 2 49.1 0.85258967 9-222 214 1
TF354229 6.4E-20 2 70.0 0.7928287 12-210 199 1
TF323925 8.0E-16 2 56.8 0.73306775 12-195 184 1
TF314412 1.1E-10 2 39.4 0.8286853 15-222 208 1
TF329469 6.9E-4 2 15.6 0.48207173 15-135 121 1
TF314529 2.1E-19 2 68.5 0.84063745 18-228 211 1
TF328437 7.0E-12 2 43.0 0.8047809 21-222 202 1
TF333421 4.3E-8 2 31.4 0.8047809 24-225 202 1
TF300072 4.2E-40 2 135.5 0.84063745 27-237 211 1
TF323449 9.2E-7 2 25.7 0.67330676 27-195 169 1
TF105705 3.0E-9 2 34.7 0.81673306 30-234 205 1
TF314172 3.1E-5 2 21.8 0.70916337 36-213 178 1
TF323180 6.1E-4 2 15.9 0.70916337 36-213 178 1
TF319739 4.3E-11 2 40.5 0.67330676 39-207 169 1
TF333280 3.6E-6 2 25.1 0.70916337 39-216 178 1
TF327176 1.5E-9 2 36.1 0.69721115 42-216 175 1
TF323486 1.7E-5 2 22.7 0.625498 42-198 157 1
TF102011 1.1E-5 2 23.6 0.625498 45-201 157 1
TF300908 4.1E-4 2 17.7 0.6494024 45-207 163 1
TF343343 2.2E-4 2 18.9 0.685259 48-219 172 1
TF327355 1.2E-4 2 19.6 0.57768923 51-195 145 1
TF300036 2.8E-29 2 102.0 0.625498 81-237 157 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)