Contig : dd_Smed_v6_457_0_1 S. mediterranea

Id  dd_Smed_v6_457_0_1 Length  623    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_066953.1 Homo sapiens peptidylprolyl isomerase A (cyclophilin A) 5.0E-63 60-551 492 1
XP_001270773.1 Aspergillus clavatus NRRL 1 peptidyl-prolyl cis-trans isomerase/cyclophilin, putative 4.0E-67 69-551 483 1
XP_007809961.1 Metarhizium acridum CQMa 102 cyclophilin A 6.0E-67 72-551 480 1

11 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.40.100.10 GENE3D IPR029000 Cyclophilin 7.2E-76 72-548 477 1
PTHR11071 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1.9E-111 78-548 471 1
PF00160 PFAM IPR002130 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 9.3E-47 81-542 462 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 4.49E-40 216-251 36 1
SSF50891 SSF IPR029000 Cyclophilin-like 2.34E-72 72-548 477 1
PS00170 PROSITE IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 0.0 201-251 51 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 4.49E-40 390-425 36 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 4.49E-40 129-173 45 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 4.49E-40 429-473 45 1
PS50072 PROFILE IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 46.297 78-545 468 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 4.49E-40 345-389 45 1

2 ORFs

Contig Location Length Strand Sequence
66-551 486 1
132-335 204 -1

16 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF318563 3.8E-72 3 242.6 0.7672552 72-549 478 1
TF324493 3.1E-94 3 315.4 0.7624398 75-549 475 1
TF314797 7.5E-61 3 204.1 0.6950241 75-507 433 1
TF312801 1.9E-126 3 422.0 0.7576244 78-549 472 1
TF354259 1.6E-109 3 365.6 0.7672552 78-555 478 1
TF312958 3.7E-71 3 239.3 0.7576244 78-549 472 1
TF351326 1.5E-65 3 221.0 0.7576244 78-549 472 1
TF313817 4.0E-99 3 332.3 0.7479936 84-549 466 1
TF300200 2.3E-59 3 200.3 0.6131621 108-489 382 1
TF105686 4.7E-53 3 179.0 0.6083467 108-486 379 1
TF351865 3.4E-31 3 108.0 0.6083467 108-486 379 1
TF352224 3.2E-47 3 160.5 0.6131621 111-492 382 1
TF300854 4.8E-42 3 143.3 0.6179775 111-495 385 1
TF316719 7.5E-81 3 271.0 0.6516854 144-549 406 1
TF352055 2.1E-9 3 34.7 0.5505618 144-486 343 1
TF105935 1.1E-27 3 95.6 0.40609953 204-456 253 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)