Contig : dd_Smed_v6_4518_0_1 S. mediterranea

Id  dd_Smed_v6_4518_0_1 Length  1931    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001812.2 Homo sapiens choroideremia-like (Rab escort protein 2) 5.0E-46 350-1618 1269 1
NP_477420.1 Drosophila melanogaster Rab escort protein 8.0E-44 32-1471 1440 1
NP_067325.2 Mus musculus choroideremia-like 3.0E-43 275-1618 1344 1

17 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.519.10 GENE3D Guanine Nucleotide Dissociation Inhibitor, domain 2 1.1E-36 353-847 495 1
PR00893 PRINTS IPR001738 Rab escort (choroideraemia) protein signature 3.7E-7 1394-1450 57 1
PR00893 PRINTS IPR001738 Rab escort (choroideraemia) protein signature 3.7E-7 1568-1624 57 1
PR00893 PRINTS IPR001738 Rab escort (choroideraemia) protein signature 3.7E-7 770-817 48 1
PTHR11787:SF4 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 3.0E-107 23-1771 1749 1
G3DSA:3.50.50.60 GENE3D   3.2E-29 851-1195 345 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 800-850 51 1
PF00996 PFAM IPR018203 GDP dissociation inhibitor 9.0E-54 44-1180 1137 1
G3DSA:3.50.50.60 GENE3D   3.2E-29 44-205 162 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 392-442 51 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 56-109 54 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 443-490 48 1
PTHR11787 PANTHER RAB GDP-DISSOCIATION INHIBITOR 3.0E-107 23-1771 1749 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 590-634 45 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 854-916 63 1
SSF51905 SSF FAD/NAD(P)-binding domain 6.47E-37 32-934 903 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 110-160 51 1

8 ORFs

Contig Location Length Strand Sequence
2-1849 1848 1
1420-1611 192 -1
1545-1703 159 1
762-917 156 1
1263-1391 129 1
658-783 126 -1
1294-1404 111 -1
567-677 111 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF320813 4.2E-69 2 232.9 0.5893319 39-1176 1138 1
TF300449 6.0E-35 2 119.8 0.43863285 87-933 847 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)