Transcript : dd_Smed_v6_4518_0_1 S. mediterranea

Length  1931     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001812.2 Homo sapiens choroideremia-like (Rab escort protein 2) 5.0E-46 350-1618 1269 1
NP_477420.1 Drosophila melanogaster Rab escort protein 8.0E-44 32-1471 1440 1
NP_067325.2 Mus musculus choroideremia-like 3.0E-43 275-1618 1344 1

17 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.519.10 GENE3D Guanine Nucleotide Dissociation Inhibitor, domain 2 1.1E-36 353-847 495 1
PR00893 PRINTS IPR001738 Rab escort (choroideraemia) protein signature 3.7E-7 1394-1450 57 1
PR00893 PRINTS IPR001738 Rab escort (choroideraemia) protein signature 3.7E-7 1568-1624 57 1
PR00893 PRINTS IPR001738 Rab escort (choroideraemia) protein signature 3.7E-7 770-817 48 1
PTHR11787:SF4 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 3.0E-107 23-1771 1749 1
G3DSA:3.50.50.60 GENE3D   3.2E-29 851-1195 345 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 800-850 51 1
PF00996 PFAM IPR018203 GDP dissociation inhibitor 9.0E-54 44-1180 1137 1
G3DSA:3.50.50.60 GENE3D   3.2E-29 44-205 162 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 392-442 51 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 56-109 54 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 443-490 48 1
PTHR11787 PANTHER RAB GDP-DISSOCIATION INHIBITOR 3.0E-107 23-1771 1749 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 590-634 45 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 854-916 63 1
SSF51905 SSF FAD/NAD(P)-binding domain 6.47E-37 32-934 903 1
PR00891 PRINTS IPR018203 Rab GDI/REP protein family signature 2.4E-35 110-160 51 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
2-1849 1848 1
1420-1611 192 -1
1545-1703 159 1
762-917 156 1
1263-1391 129 1
658-783 126 -1
1294-1404 111 -1
567-677 111 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF320813 4.2E-69 2 232.9 0.5893319 39-1176 1138 1
TF300449 6.0E-35 2 119.8 0.43863285 87-933 847 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)