Transcript : dd_Smed_v6_4477_0_1 S. mediterranea

Length  888     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002405527.1 Ixodes scapularis receptor-transporting protein, putative 4.0E-17 160-573 414 1
XP_006022507.1 Alligator sinensis receptor (chemosensory) transporter protein 1 4.0E-9 139-531 393 1
XP_007531510.1 Erinaceus europaeus receptor (chemosensory) transporter protein 3 2.0E-7 244-651 408 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF13695 PFAM IPR027377 Zinc-binding domain 3.5E-13 256-549 294 1
PTHR14402 PANTHER IPR026096 RECEPTOR TRANSPORTING PROTEIN 3.3E-23 247-573 327 1
PTHR14402:SF11 PANTHER SUBFAMILY NOT NAMED 3.3E-23 247-573 327 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
28-744 717 1
168-464 297 -1
2-202 201 1
329-466 138 1
384-494 111 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)