Contig : dd_Smed_v6_446_0_1 S. mediterranea

Id  dd_Smed_v6_446_0_1 Length  725    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

0 Blast SequenceFeatures

15 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1.8E-14 354-584 231 1
SSF47473 SSF EF-hand 4.42E-16 375-422 48 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 7.065 90-188 99 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.042 204-287 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 1.8 102-185 84 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 3.2E-18 63-587 525 1
PTHR11886:SF42 PANTHER SUBFAMILY NOT NAMED 3.2E-18 63-587 525 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 129-164 36 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.9E-15 87-302 216 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 231-266 36 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 12.672 192-296 105 1
SSF54648 SSF DLC 7.46E-19 339-587 249 1
SSF47473 SSF EF-hand 4.42E-16 81-278 198 1
PF13499 PFAM IPR011992 EF-hand domain pair 2.9E-12 105-272 168 1
PF01221 PFAM IPR001372 Dynein light chain type 1 2.8E-12 366-584 219 1

3 ORFs

Contig Location Length Strand Sequence
69-596 528 1
198-413 216 -1
202-330 129 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351232 4.8E-32 3 110.4 0.6675862 108-591 484 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)