Transcript : dd_Smed_v6_446_0_1 S. mediterranea

Length  725     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

0 Blast Sequence Features

15 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1.8E-14 354-584 231 1
SSF47473 SSF EF-hand 4.42E-16 375-422 48 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 7.065 90-188 99 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.042 204-287 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 1.8 102-185 84 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 3.2E-18 63-587 525 1
PTHR11886:SF42 PANTHER SUBFAMILY NOT NAMED 3.2E-18 63-587 525 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 129-164 36 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.9E-15 87-302 216 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 231-266 36 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 12.672 192-296 105 1
SSF54648 SSF DLC 7.46E-19 339-587 249 1
SSF47473 SSF EF-hand 4.42E-16 81-278 198 1
PF13499 PFAM IPR011992 EF-hand domain pair 2.9E-12 105-272 168 1
PF01221 PFAM IPR001372 Dynein light chain type 1 2.8E-12 366-584 219 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
69-596 528 1
198-413 216 -1
202-330 129 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351232 4.8E-32 3 110.4 0.6675862 108-591 484 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)