Transcript : dd_Smed_v6_445_0_1 S. mediterranea

Length  1224     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: AY068181.1, unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006088.2 Homo sapiens myosin light chain 9 2.0E-56 447-905 459 1
NP_001267760.1 Aplysia californica myosin regulatory light chain (N-terminus) 4.0E-72 408-908 501 1
XP_783666.1 Strongylocentrotus purpuratus myosin regulatory light polypeptide 9-like 6.0E-64 441-908 468 1

11 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 14.737 486-590 105 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 8.9E-17 693-881 189 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 4.5E-23 483-668 186 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 3.8E-6 498-581 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.69 705-788 84 1
PTHR23049 PANTHER MYOSIN REGULATORY LIGHT CHAIN 2 2.6E-91 438-905 468 1
PF00036 PFAM IPR002048 EF hand 1.4E-7 498-581 84 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 11.696 693-797 105 1
SSF47473 SSF EF-hand 4.58E-40 477-884 408 1
PF13405 PFAM IPR002048 EF-hand domain 0.0025 708-785 78 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 525-560 36 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
408-908 501 1
530-769 240 -1
1-228 228 -1
865-1017 153 1
1095-1223 129 -1
232-339 108 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)