Contig : dd_Smed_v6_433_0_1 S. mediterranea

Id  dd_Smed_v6_433_0_1 Length  647    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_650264.1 Drosophila melanogaster CG8483 gene product from transcript CG8483-RA 2.0E-32 63-554 492 1
XP_001480681.1 Mus musculus GLI pathogenesis-related 1 like 3 1.0E-30 3-560 558 1
XP_005248974.1 Homo sapiens peptidase inhibitor 16 3.0E-28 36-560 525 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.6E-16 171-224 54 1
SSF55797 SSF IPR014044 PR-1-like 6.28E-53 21-539 519 1
SM00198 SMART IPR001283 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. 9.2E-50 72-518 447 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.6E-16 321-359 39 1
PTHR10334 PANTHER IPR001283 CYSTEINE-RICH SECRETORY PROTEIN-RELATED 8.3E-69 54-590 537 1
PF00188 PFAM IPR014044 Cysteine-rich secretory protein family 8.1E-23 90-494 405 1
PS01009 PROSITE IPR018244 CRISP family signature 1. 0.0 393-422 30 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 1.4E-11 387-443 57 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 1.4E-11 60-107 48 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 1.4E-11 315-359 45 1
PS01010 PROSITE IPR018244 CRISP family signature 2. 0.0 480-512 33 1
G3DSA:3.40.33.10 GENE3D IPR014044 Pathogenesis-related Protein p14a 4.6E-61 54-590 537 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.6E-16 390-437 48 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.6E-16 480-518 39 1

5 ORFs

Contig Location Length Strand Sequence
3-593 591 1
247-474 228 1
25-228 204 -1
70-243 174 1
517-645 129 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF352353 3.7E-19 3 67.5 0.7990726 63-579 517 1
TF350472 8.2E-31 3 107.1 0.7527048 81-567 487 1
TF313138 1.6E-30 3 105.5 0.6692427 90-522 433 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)