Transcript : dd_Smed_v6_433_0_1 S. mediterranea

Length  647     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_650264.1 Drosophila melanogaster CG8483 gene product from transcript CG8483-RA 2.0E-32 63-554 492 1
XP_001480681.1 Mus musculus GLI pathogenesis-related 1 like 3 1.0E-30 3-560 558 1
XP_005248974.1 Homo sapiens peptidase inhibitor 16 3.0E-28 36-560 525 1

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.6E-16 171-224 54 1
SSF55797 SSF IPR014044 PR-1-like 6.28E-53 21-539 519 1
SM00198 SMART IPR001283 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. 9.2E-50 72-518 447 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.6E-16 321-359 39 1
PTHR10334 PANTHER IPR001283 CYSTEINE-RICH SECRETORY PROTEIN-RELATED 8.3E-69 54-590 537 1
PF00188 PFAM IPR014044 Cysteine-rich secretory protein family 8.1E-23 90-494 405 1
PS01009 PROSITE IPR018244 CRISP family signature 1. 0.0 393-422 30 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 1.4E-11 387-443 57 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 1.4E-11 60-107 48 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 1.4E-11 315-359 45 1
PS01010 PROSITE IPR018244 CRISP family signature 2. 0.0 480-512 33 1
G3DSA:3.40.33.10 GENE3D IPR014044 Pathogenesis-related Protein p14a 4.6E-61 54-590 537 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.6E-16 390-437 48 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 1.6E-16 480-518 39 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
3-593 591 1
247-474 228 1
25-228 204 -1
70-243 174 1
517-645 129 -1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF352353 3.7E-19 3 67.5 0.7990726 63-579 517 1
TF350472 8.2E-31 3 107.1 0.7527048 81-567 487 1
TF313138 1.6E-30 3 105.5 0.6692427 90-522 433 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)