Transcript : dd_Smed_v6_42610_0_1 S. mediterranea

Length  1168     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: JN400361.1, tyramine beta-hydroxilase mRNA - partial cds
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

0 Blast Sequence Features

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF49742 SSF IPR008977 PHM/PNGase F 1.46E-43 396-854 459 1
PTHR10157 PANTHER IPR000945 DOPAMINE BETA HYDROXYLASE RELATED 1.4E-165 3-1094 1092 1
G3DSA:2.60.120.310 GENE3D IPR000323   1.2E-43 3-407 405 1
PR00767 PRINTS IPR000945 Dopamine-beta-monooxygenase signature 2.34E-28 9-68 60 1
PR00767 PRINTS IPR000945 Dopamine-beta-monooxygenase signature 2.34E-28 942-1001 60 1
PR00767 PRINTS IPR000945 Dopamine-beta-monooxygenase signature 2.34E-28 408-458 51 1
PR00767 PRINTS IPR000945 Dopamine-beta-monooxygenase signature 2.34E-28 159-212 54 1
PR00767 PRINTS IPR000945 Dopamine-beta-monooxygenase signature 2.34E-28 216-272 57 1
PF01082 PFAM IPR000323 Copper type II ascorbate-dependent monooxygenase, N-terminal domain 1.6E-36 3-347 345 1
SSF49742 SSF IPR008977 PHM/PNGase F 1.57E-37 3-395 393 1
G3DSA:2.60.120.230 GENE3D IPR014784   1.1E-49 420-863 444 1
PS00084 PROSITE IPR020611 Copper type II, ascorbate-dependent monooxygenases signature 1. 0.0 105-125 21 1
PF03712 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain 2.1E-45 399-860 462 1
PTHR10157:SF4 PANTHER IPR028460 DOPAMINE BETA-HYDROXYLASE 1.4E-165 3-1094 1092 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
3-1115 1113 1
1033-1143 111 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF320698 4.5E-162 3 541.2 0.86130136 3-1008 1006 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)