Contig : dd_Smed_v6_414_0_1 S. mediterranea

Id  dd_Smed_v6_414_0_1 Length  989    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523710.1 Drosophila melanogaster Calmodulin 2.0E-97 101-547 447 1
NP_001734.1 Homo sapiens calmodulin 2 (phosphorylase kinase, delta) 3.0E-96 101-547 447 1
XP_003743876.1 Metaseiulus occidentalis calmodulin-like 3.0E-98 95-547 453 1

19 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23050:SF150 PANTHER CALMODULIN 6.4E-117 101-544 444 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 2.5E-9 461-544 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 5.8E-9 353-436 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 8.5E-9 134-217 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 7.2E-9 242-325 84 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 269-304 36 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.4E-37 308-538 231 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 14.792 230-334 105 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 488-523 36 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 15.155 449-544 96 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 380-415 36 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 17.303 122-226 105 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 17.972 341-445 105 1
PF13499 PFAM IPR011992 EF-hand domain pair 2.2E-15 140-316 177 1
PF13499 PFAM IPR011992 EF-hand domain pair 6.9E-21 356-535 180 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 161-196 36 1
SSF47473 SSF EF-hand 6.96E-59 101-538 438 1
PTHR23050 PANTHER CALCIUM BINDING PROTEIN 6.4E-117 101-544 444 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 8.4E-43 107-304 198 1

5 ORFs

Contig Location Length Strand Sequence
101-547 447 1
250-492 243 -1
808-987 180 -1
210-368 159 -1
872-982 111 1

12 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF339519 1.3E-70 2 237.4 0.45904955 93-546 454 1
TF318191 9.2E-71 2 237.9 0.43781596 111-543 433 1
TF334804 1.6E-43 2 148.1 0.4347826 111-540 430 1
TF354258 1.6E-103 2 345.6 0.4347826 114-543 430 1
TF101141 5.5E-69 2 232.0 0.4347826 114-543 430 1
TF351552 2.2E-54 2 184.3 0.41961578 114-528 415 1
TF315456 2.7E-43 2 147.3 0.42264915 117-534 418 1
TF327112 2.5E-39 2 134.4 0.42264915 120-537 418 1
TF351551 3.0E-23 2 81.3 0.4074823 126-528 403 1
TF313209 3.0E-10 2 38.8 0.4074823 129-531 403 1
TF324069 2.0E-36 2 124.4 0.4074823 141-543 403 1
TF105558 5.2E-18 2 64.6 0.40444893 147-546 400 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)