Contig : dd_Smed_v6_405_0_1 S. mediterranea

Id  dd_Smed_v6_405_0_1 Length  1321    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_732002.1 Drosophila melanogaster Tropomyosin 1 8.0E-61 357-1070 714 1
NP_001187627.1 Ictalurus punctatus tropomyosin 8.0E-85 354-1079 726 1
XP_005089094.1 Aplysia californica tropomyosin-2-like 4.0E-71 363-1079 717 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.20.5.170 GENE3D   3.4E-4 864-1052 189 1
PTHR19269 PANTHER TROPOMYOSIN 7.5E-122 228-1076 849 1
PR00194 PRINTS IPR000533 Tropomyosin signature 1.6E-47 477-527 51 1
PR00194 PRINTS IPR000533 Tropomyosin signature 1.6E-47 585-644 60 1
PR00194 PRINTS IPR000533 Tropomyosin signature 1.6E-47 750-818 69 1
PR00194 PRINTS IPR000533 Tropomyosin signature 1.6E-47 918-992 75 1
G3DSA:1.20.5.340 GENE3D   2.0E-15 450-593 144 1
G3DSA:1.20.5.340 GENE3D   2.1E-14 228-446 219 1
PS00326 PROSITE IPR000533 Tropomyosins signature. 0.0 921-944 24 1
SSF57997 SSF Tropomyosin 1.84E-82 228-1073 846 1
PR00194 PRINTS IPR000533 Tropomyosin signature 1.6E-47 660-743 84 1
PF00261 PFAM IPR000533 Tropomyosin 2.5E-89 375-1073 699 1

6 ORFs

Contig Location Length Strand Sequence
228-1079 852 1
548-838 291 -1
1000-1161 162 1
349-480 132 1
1101-1223 123 1
1082-1189 108 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351519 6.3E-121 3 404.4 0.63890994 231-1074 844 1
TF326096 0.0071 3 13.1 0.61847085 231-1047 817 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)