Transcript : dd_Smed_v6_3_0_1 S. mediterranea

Length  1634     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067410.1, clone H.18.11a unknown mRNA sequence
AY067409.1, clone H.99.10g unknown mRNA sequence
AY967481.1, clone HE.1.06C mRNA sequence
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Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001092.1 Homo sapiens actin, beta 0.0 45-1166 1122 1
NP_511052.1 Drosophila melanogaster Actin 5C 0.0 39-1166 1128 1
NP_505818.1 Caenorhabditis elegans Actin-2 0.0 39-1166 1128 1

18 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF53067 SSF Actin-like ATPase domain 6.78E-67 51-497 447 1
G3DSA:3.90.640.10 GENE3D Actin; Chain A, domain 4 1.2E-42 600-806 207 1
PS00406 PROSITE IPR004001 Actins signature 1. 0.0 198-227 30 1
PS00432 PROSITE IPR004001 Actins signature 2. 0.0 1107-1130 24 1
PR00190 PRINTS IPR004000 Actin signature 4.8E-58 384-422 39 1
PR00190 PRINTS IPR004000 Actin signature 4.8E-58 459-515 57 1
PR00190 PRINTS IPR004000 Actin signature 4.8E-58 186-218 33 1
PR00190 PRINTS IPR004000 Actin signature 4.8E-58 222-287 66 1
PR00190 PRINTS IPR004000 Actin signature 4.8E-58 117-143 27 1
PR00190 PRINTS IPR004000 Actin signature 4.8E-58 747-794 48 1
PTHR11937 PANTHER IPR004000 ACTIN 0.0 39-1163 1125 1
PS01132 PROSITE IPR020902 Actins and actin-related proteins signature. 0.0 351-386 36 1
SM00268 SMART IPR004000 Actin 3.0E-239 54-1163 1110 1
PTHR11937:SF162 PANTHER ACTIN-57B-RELATED 0.0 39-1163 1125 1
G3DSA:3.30.420.40 GENE3D   5.3E-80 48-596 549 1
PF00022 PFAM IPR004000 Actin 6.5E-160 48-1163 1116 1
SSF53067 SSF Actin-like ATPase domain 2.51E-99 477-1163 687 1
G3DSA:3.30.420.40 GENE3D   8.1E-41 810-1157 348 1

Genomics

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9 ORFs

Contig Location Length Strand Sequence
39-1166 1128 1
1252-1395 144 1
2-142 141 -1
1-138 138 -1
314-448 135 -1
112-234 123 1
898-1014 117 1
45-161 117 -1
237-344 108 -1

6 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF337161 6.3E-159 3 530.0 0.6762546 60-1164 1105 1
TF300420 3.3E-183 3 609.4 0.6744186 63-1164 1102 1
TF340354 6.0E-87 3 291.8 0.6560587 63-1134 1072 1
TF300467 1.1E-106 3 356.5 0.6505508 93-1155 1063 1
TF300644 9.6E-67 3 225.2 0.6119951 162-1161 1000 1
TF300361 3.1E-157 3 523.3 0.44308445 441-1164 724 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)