Transcript : dd_Smed_v6_398_0_1 S. mediterranea

Length  1606     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_733141.1 Drosophila melanogaster Aldolase 2.0E-158 104-1189 1086 1
XP_005182614.1 Musca domestica fructose-bisphosphate aldolase 1.0E-166 104-1189 1086 1
NP_001091766.1 Bombyx mori fructose 1,6-bisphosphate aldolase 1.0E-165 104-1189 1086 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF51569 SSF Aldolase 8.79E-145 116-1186 1071 1
PTHR11627 PANTHER IPR000741 FRUCTOSE-BISPHOSPHATE ALDOLASE 5.5E-255 86-1186 1101 1
G3DSA:3.20.20.70 GENE3D IPR013785 Aldolase class I 2.9E-167 119-1138 1020 1
PS00158 PROSITE IPR000741 Fructose-bisphosphate aldolase class-I active site. 0.0 767-796 30 1
PF00274 PFAM IPR000741 Fructose-bisphosphate aldolase class-I 1.4E-164 146-1186 1041 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
104-1189 1086 1
1107-1262 156 1
178-324 147 -1
603-731 129 1
1089-1211 123 -1
1327-1440 114 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314203 1.6E-210 2 699.1 0.67496884 105-1188 1084 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)