Transcript : dd_Smed_v6_3974_0_1 S. mediterranea

Length  1026     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002023.2 Homo sapiens ferritin, heavy polypeptide 1 2.0E-72 117-620 504 1
NP_001191661.1 Aplysia californica soma ferritin 6.0E-79 114-623 510 1
XP_005988039.1 Latimeria chalumnae ferritin, heavy polypeptide 1 7.0E-78 117-632 516 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00210 PFAM IPR008331 Ferritin-like domain 4.1E-47 156-572 417 1
SSF47240 SSF IPR009078 Ferritin-like 3.95E-74 114-617 504 1
PS00204 PROSITE IPR014034 Ferritin iron-binding regions signature 2. 0.0 477-536 60 1
PS50905 PROFILE IPR009040 Ferritin-like diiron domain profile. 53.403 129-575 447 1
G3DSA:1.20.1260.10 GENE3D IPR012347   5.0E-87 111-617 507 1
PTHR11431 PANTHER IPR001519 FERRITIN 3.3E-110 114-629 516 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
114-632 519 1
923-1024 102 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)