Contig : dd_Smed_v6_393_0_1 S. mediterranea

Id  dd_Smed_v6_393_0_1 Length  932    Open in Genome Browser

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Planmine Rnai Result Displayer

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Homologue Displayer

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003002.2 Homo sapiens SET nuclear proto-oncogene 1.0E-62 109-732 624 1
NP_001191804.1 Mus musculus SET nuclear oncogene 8.0E-62 166-732 567 1
XP_005113095.1 Aplysia californica protein SET-like 2.0E-65 106-735 630 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF143113 SSF NAP-like 5.23E-65 151-729 579 1
PF00956 PFAM IPR002164 Nucleosome assembly protein (NAP) 3.6E-52 172-732 561 1
PTHR11875 PANTHER IPR002164 TESTIS-SPECIFIC Y-ENCODED PROTEIN 1.0E-88 145-825 681 1

5 ORFs

Contig Location Length Strand Sequence
106-828 723 1
512-688 177 1
698-841 144 1
217-348 132 -1
729-851 123 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313386 1.0E-92 1 310.7 0.6287554 171-756 586 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)