Transcript : dd_Smed_v6_393_0_1 S. mediterranea

Length  932     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068217.1, clone H.96.10c unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003002.2 Homo sapiens SET nuclear proto-oncogene 1.0E-62 109-732 624 1
NP_001191804.1 Mus musculus SET nuclear oncogene 8.0E-62 166-732 567 1
XP_005113095.1 Aplysia californica protein SET-like 2.0E-65 106-735 630 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF143113 SSF NAP-like 5.23E-65 151-729 579 1
PF00956 PFAM IPR002164 Nucleosome assembly protein (NAP) 3.6E-52 172-732 561 1
PTHR11875 PANTHER IPR002164 TESTIS-SPECIFIC Y-ENCODED PROTEIN 1.0E-88 145-825 681 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
106-828 723 1
512-688 177 1
698-841 144 1
217-348 132 -1
729-851 123 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313386 1.0E-92 1 310.7 0.6287554 171-756 586 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)