Contig : dd_Smed_v6_38_0_2 S. mediterranea

Id  dd_Smed_v6_38_0_2 Length  1634    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_033472.1 Mus musculus tubulin, alpha 3A 0.0 168-1487 1320 1
NP_476772.1 Drosophila melanogaster alpha-Tubulin at 84B 0.0 168-1484 1317 1
NP_989129.1 Xenopus (Silurana) tropicalis tubulin, alpha 1a 0.0 168-1487 1320 1

34 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.1330.20 GENE3D IPR018316   1.4E-57 975-1313 339 1
PS00227 PROSITE IPR017975 Tubulin subunits alpha, beta, and gamma signature. 0.0 591-608 18 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 324-380 57 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 741-800 60 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 4.32E-100 168-896 729 1
G3DSA:3.40.50.1440 GENE3D IPR003008   5.6E-132 168-968 801 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 450-482 33 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 489-560 72 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 1305-1388 84 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 567-620 54 1
PTHR11588 PANTHER IPR000217 TUBULIN 0.0 168-1514 1347 1
G3DSA:1.10.287.600 GENE3D IPR023123 Helix hairpin bin 3.7E-30 1317-1481 165 1
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 1.8E-60 909-1343 435 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 3.4E-51 954-1340 387 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 429-467 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1206-1244 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 219-263 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 609-644 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 648-680 33 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 987-1031 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 300-338 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1320-1367 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1245-1301 57 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1431-1478 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 525-548 24 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1128-1190 63 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 807-842 36 1
SSF55307 SSF IPR008280 Tubulin C-terminal domain-like 6.71E-87 903-1472 570 1
PTHR11588:SF65 PANTHER TUBULIN ALPHA-3C/D CHAIN 0.0 168-1514 1347 1
SM00864 SMART IPR003008 Tubulin/FtsZ family, GTPase domain 8.4E-83 312-902 591 1

9 ORFs

Contig Location Length Strand Sequence
168-1520 1353 1
190-441 252 1
385-588 204 -1
1363-1560 198 1
139-312 174 -1
1-162 162 1
883-1011 129 -1
460-573 114 1
2-109 108 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300477 1.2E-76 3 257.3 0.7955936 171-1470 1300 1
TF329833 6.4E-29 3 99.3 0.41738066 177-858 682 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)