Contig : dd_Smed_v6_3871_0_1 S. mediterranea

Id  dd_Smed_v6_3871_0_1 Length  1862    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_476616.1 Drosophila melanogaster Lamin 7.0E-38 160-1716 1557 1
NP_005563.1 Homo sapiens lamin A/C 7.0E-32 187-1716 1530 1
XP_003377744.1 Trichinella spiralis intermediate filament protein ifa-1 9.0E-100 124-1737 1614 1

11 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 3.0E-126 181-1728 1548 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.05E-11 193-297 105 1
PS00226 PROSITE IPR018039 Intermediate filaments signature. 0.0 1213-1236 24 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 2.88E-33 1354-1740 387 1
G3DSA:1.20.5.170 GENE3D   3.8E-18 1018-1251 234 1
PF00932 PFAM IPR001322 Lamin Tail Domain 4.6E-9 1390-1728 339 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 3.0E-126 181-1728 1548 1
PF00038 PFAM IPR001664 Intermediate filament protein 3.1E-57 196-1251 1056 1
G3DSA:2.60.40.1260 GENE3D IPR001322   3.1E-29 1333-1737 405 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.69E-15 1021-1239 219 1
SSF57997 SSF Tropomyosin 3.01E-5 190-657 468 1

6 ORFs

Contig Location Length Strand Sequence
31-1746 1716 1
1086-1286 201 -1
1594-1782 189 -1
1631-1771 141 1
1395-1535 141 -1
601-738 138 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 4.1E-155 1 518.0 0.84962404 171-1752 1582 1
TF316392 4.7E-9 1 33.6 0.566058 189-1242 1054 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)