Contig : dd_Smed_v6_3871_0_1 S. mediterranea
Id  dd_Smed_v6_3871_0_1 Length  1862    Open in Genome Browser
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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_476616.1 Drosophila melanogaster Lamin 7.0E-38 160-1716 1557 1
NP_005563.1 Homo sapiens lamin A/C 7.0E-32 187-1716 1530 1
XP_003377744.1 Trichinella spiralis intermediate filament protein ifa-1 9.0E-100 124-1737 1614 1

11 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 3.0E-126 181-1728 1548 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.05E-11 193-297 105 1
PS00226 PROSITE IPR018039 Intermediate filaments signature. 0.0 1213-1236 24 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 2.88E-33 1354-1740 387 1
G3DSA:1.20.5.170 GENE3D   3.8E-18 1018-1251 234 1
PF00932 PFAM IPR001322 Lamin Tail Domain 4.6E-9 1390-1728 339 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 3.0E-126 181-1728 1548 1
PF00038 PFAM IPR001664 Intermediate filament protein 3.1E-57 196-1251 1056 1
G3DSA:2.60.40.1260 GENE3D IPR001322   3.1E-29 1333-1737 405 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.69E-15 1021-1239 219 1
SSF57997 SSF Tropomyosin 3.01E-5 190-657 468 1

6 ORFs

Contig Location Length Strand Sequence
31-1746 1716 1
1086-1286 201 -1
1594-1782 189 -1
1631-1771 141 1
1395-1535 141 -1
601-738 138 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 4.1E-155 1 518.0 0.84962404 171-1752 1582 1
TF316392 4.7E-9 1 33.6 0.566058 189-1242 1054 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)