Transcript : dd_Smed_v6_3862_0_1 S. mediterranea

Length  1039     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967541.1, clone HE.4.05F mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_620471.3 Drosophila melanogaster CG1168 gene product from transcript CG1168-RB 3.0E-9 428-832 405 1
XP_008190030.1 Acyrthosiphon pisum neuroendocrine protein 7B2 2.0E-12 428-826 399 1
XP_004926576.1 Bombyx mori neuroendocrine protein 7B2-like 1.0E-11 458-826 369 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12738:SF0 PANTHER NEUROENDOCRINE PROTEIN 7B2 5.9E-22 155-850 696 1
PF05281 PFAM IPR007945 Neuroendocrine protein 7B2 precursor (Secretogranin V) 2.8E-24 365-742 378 1
PTHR12738 PANTHER IPR007945 NEUROENDOCRINE PROTEIN 7B2 5.9E-22 155-850 696 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
158-853 696 1
767-1039 273 -1
435-680 246 1
37-189 153 1
291-407 117 1
924-1037 114 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)