Contig : dd_Smed_v6_3802_0_1 S. mediterranea

Id  dd_Smed_v6_3802_0_1 Length  566    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_648808.1 Drosophila melanogaster CG15715 gene product from transcript CG15715-RB 3.0E-22 70-288 219 1
NP_057180.1 Homo sapiens zinc finger protein 706 5.0E-20 70-288 219 1
XP_001478161.1 Mus musculus predicted gene 10193 1.0E-18 70-288 219 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR21213 PANTHER IPR026939 FAMILY NOT NAMED 1.6E-36 70-288 219 1
PF04419 PFAM IPR007513 4F5 protein family 1.0E-10 70-174 105 1
G3DSA:4.10.1050.10 GENE3D IPR026939 At2g23090 1.3E-21 70-285 216 1
PF12907 PFAM Zinc-binding 4.8E-5 181-261 81 1
SSF118359 SSF IPR026939 Expressed protein At2g23090/F21P24.15 2.35E-24 70-285 216 1

4 ORFs

Contig Location Length Strand Sequence
70-294 225 1
347-511 165 1
3-125 123 1
133-252 120 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)