Transcript : dd_Smed_v6_3802_0_1 S. mediterranea

Length  566     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_648808.1 Drosophila melanogaster CG15715 gene product from transcript CG15715-RB 3.0E-22 70-288 219 1
NP_057180.1 Homo sapiens zinc finger protein 706 5.0E-20 70-288 219 1
XP_001478161.1 Mus musculus predicted gene 10193 1.0E-18 70-288 219 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR21213 PANTHER IPR026939 FAMILY NOT NAMED 1.6E-36 70-288 219 1
PF04419 PFAM IPR007513 4F5 protein family 1.0E-10 70-174 105 1
G3DSA:4.10.1050.10 GENE3D IPR026939 At2g23090 1.3E-21 70-285 216 1
PF12907 PFAM Zinc-binding 4.8E-5 181-261 81 1
SSF118359 SSF IPR026939 Expressed protein At2g23090/F21P24.15 2.35E-24 70-285 216 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
70-294 225 1
347-511 165 1
3-125 123 1
133-252 120 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)