Contig : dd_Smed_v6_375_0_1 S. mediterranea

Id  dd_Smed_v6_375_0_1 Length  2458    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006503714.1 Mus musculus RAB28, member RAS oncogene family 6.0E-55 1558-2136 579 1
NP_001017979.1 Homo sapiens RAB28, member RAS oncogene family 2.0E-54 1558-2136 579 1
XP_002733914.1 Saccoglossus kowalevskii ras-related protein Rab-28-like 5.0E-59 1558-2106 549 1

16 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00175 SMART IPR003579 Rab subfamily of small GTPases 1.3E-19 1558-2022 465 1
TIGR00231 TIGRFAMs IPR005225 small_GTP: small GTP-binding protein domain 1.0E-15 1558-1926 369 1
PF00071 PFAM IPR001806 Ras family 4.4E-33 1558-2013 456 1
SM00173 SMART IPR020849 Ras subfamily of RAS small GTPases 8.5E-8 1558-2022 465 1
PS51419 PROFILE small GTPase Rab1 family profile. 17.424 1507-2154 648 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 7.03E-7 1645-1710 66 1
PTHR24073 PANTHER FAMILY NOT NAMED 3.3E-47 1558-2217 660 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 3.12E-36 1558-2052 495 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.3E-40 1558-2061 504 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 7.03E-7 1591-1638 48 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 7.03E-7 1843-1881 39 1
PF00992 PFAM IPR001978 Troponin 1.1E-8 554-805 252 1
SSF90250 SSF Troponin coil-coiled subunits 3.27E-30 557-967 411 1
G3DSA:1.20.5.350 GENE3D   1.3E-23 560-808 249 1
PTHR11521 PANTHER IPR027707 TROPONIN T 1.7E-68 146-1000 855 1
PTHR11521:SF1 PANTHER TROPONIN T, SKELETAL MUSCLE 1.7E-68 146-1000 855 1

7 ORFs

Contig Location Length Strand Sequence
125-1090 966 1
1501-2229 729 1
1029-1163 135 -1
1953-2078 126 -1
399-512 114 1
1443-1556 114 1
2346-2456 111 -1

0 Treefam SequenceFeatures

 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)