Contig : dd_Smed_v6_371_0_1 S. mediterranea

Id  dd_Smed_v6_371_0_1 Length  1138    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_038636.2 Mus musculus nascent polypeptide-associated complex alpha polypeptide 3.0E-45 175-654 480 1
NP_001106673.1 Homo sapiens nascent polypeptide-associated complex alpha subunit 3.0E-45 175-654 480 1
XP_004212337.1 Hydra vulgaris nascent polypeptide-associated complex subunit alpha, muscle-specific form-like 8.0E-48 154-654 501 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01849 PFAM IPR002715 NAC domain 6.6E-23 211-381 171 1
PTHR21713 PANTHER IPR016641 NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUN 1.6E-94 97-654 558 1
PF00627 PFAM IPR000449 UBA/TS-N domain 1.6E-5 547-648 102 1
SSF46934 SSF IPR009060 UBA-like 3.44E-5 538-651 114 1
PS51151 PROFILE IPR002715 NAC A/B domain profile. 18.545 202-396 195 1
G3DSA:1.10.8.10 GENE3D DNA helicase RuvA subunit, C-terminal domain 3.0E-19 541-651 111 1

4 ORFs

Contig Location Length Strand Sequence
58-657 600 1
705-995 291 -1
87-281 195 -1
865-978 114 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313348 3.2E-90 1 303.0 0.48594025 102-654 553 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)