Transcript : dd_Smed_v6_371_0_1 S. mediterranea [Putative Chimera]

Length  1138     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067319.1, clone H.114.2g unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_038636.2 Mus musculus nascent polypeptide-associated complex alpha polypeptide 3.0E-45 175-654 480 1
NP_001106673.1 Homo sapiens nascent polypeptide-associated complex alpha subunit 3.0E-45 175-654 480 1
XP_004212337.1 Hydra vulgaris nascent polypeptide-associated complex subunit alpha-like 8.0E-48 154-654 501 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01849 PFAM IPR002715 NAC domain 6.6E-23 211-381 171 1
PTHR21713 PANTHER IPR016641 NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUN 1.6E-94 97-654 558 1
PF00627 PFAM IPR000449 UBA/TS-N domain 1.6E-5 547-648 102 1
SSF46934 SSF IPR009060 UBA-like 3.44E-5 538-651 114 1
PS51151 PROFILE IPR002715 NAC A/B domain profile. 18.545 202-396 195 1
G3DSA:1.10.8.10 GENE3D DNA helicase RuvA subunit, C-terminal domain 3.0E-19 541-651 111 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
58-657 600 1
705-995 291 -1
87-281 195 -1
865-978 114 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313348 3.2E-90 1 303.0 0.48594025 102-654 553 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)